FMO13316.5prime Sequence
1130 bp (1030 high quality bases) assembled on 2013-02-11
> FMO13316.5prime
CAGTCGACATGACGACCCCGCTGCAGACACGAATGGCACTGGCCGAGATT
CCCGACCGCCTGGAGGCGCTGCGTATGGCCAACACACCGACGAACTCCAA
TCGCCGGACTCCGGATGAGCCGACTCCAGCGGCCATCATAAACACTCCGA
ATGCTAACGGAGGACTGGGACTGCGGGTGGACAACGATGTAAACGTGGTG
CAGGCCCAGGACTTTGTCTTCTCTCCATTGCCCTCGCCAGATGAGCTGGT
CATTCGGCAGCGTGGTCGCCGTCGCTTTACCACAACATATTCTCCAGATA
AGGTCAACGGAGGTGGTGGCGCAGGAGGAGGTGCCAGCGGTGGTTCCTCA
ATGCGTAGTCCTTTCCAGCGCACGCCCACCAAGAACTTTCAACTAACAAG
CGGCATGATCCTGCGCAGCTCCCCTCGCAAACGCCTGACCATGGGCAGCA
CTCCGCCAGAGCCCACACCAATGGATACCTACTCGCCCATCAAGATGGCC
ACCACCAAGCAACTTTGGCCGGGAACACCAGTTGTAAAGAAGCTAAAAAT
GGAGGATAGACCTGTGGGGCAGACGAACACAGATGCGACGCTACCATCCC
TGTTGCAGGGTCTATCGCAGGAGCAACTAATCGATTTGATCATGAACAAC
ATTAAAAGTGCCAGTGATGAGGGAGAAATACGAACGCAGCTGCCCACGCC
AGACATAAGCGCTTTGGAGCAGGATCTGCACCATGCTAAGCGGCTCATCT
TCAAGTCCCTTCCCACCTCCCGGCTGTGCAAGAAAACCGATGCGGCGGCC
TACTCCAAGGCGTCGATGCATCTAAACGAATTTAAGCGGGTGCTGCAATC
GCACGCCAAGCGCCTGCACGACTCCACTCACTGGACGCACTAGTGGACTA
CGTATCCATGGCCTGGCAGTGCGTGCTAGTACGCCCACTGGGAGAGCCAT
GCCCACATGCGTTCGCCGGCAATGCTTCAAGCTGTTGGCGTGCTCCTGCT
ATGCGCCATTAAGCACGGAGGATTGCGAATGGTCAGCTGCGACTCGAGAC
ACCTGGAACGCATTTGCGGAATGGTTCCAAGACCTATGAGACTGCCTGTC
CTGTGTGACGGCCCTGGCACGCTAGCTTAC
FMO13316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5199-RB | 1639 | CG5199-RB | 213..1328 | 9..1116 | 5140 | 98.1 | Plus |
| CG5199-RA | 1643 | CG5199-RA | 217..1332 | 9..1116 | 5140 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20451875..20452575 | 709..9 | 3505 | 100 | Minus |
| 3L | 28110227 | 3L | 20450908..20451259 | 1052..708 | 1365 | 97.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:30:27 has no hits.
FMO13316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:36 Download gff for
FMO13316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5199-RA | 209..1333 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:58 Download gff for
FMO13316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5199-RA | 212..1336 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:14 Download gff for
FMO13316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5199-RA | 212..1336 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:14 Download gff for
FMO13316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20450839..20451257 | 710..1122 | 94 | <- | Minus |
| 3L | 20451875..20452579 | 1..709 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:58 Download gff for
FMO13316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20443939..20444357 | 710..1122 | 94 | <- | Minus |
| arm_3L | 20444975..20445679 | 1..709 | 99 | | Minus |
