FMO13317.5prime Sequence
1139 bp (1034 high quality bases) assembled on 2013-02-11
> FMO13317.5prime
CAGTCGACATGTCGGGCTTACGCAAAACATCCATTGCGCTGATGAGGCGC
TCCACATCCAGCACCACCATACTGCCGCATTCCGGGGGCGTTGGTGGTGC
CGTGTCGCCGCCCAGCAGCGGAGTGGGCGTGGCCACGGAAATTGAAAAAT
CAATTGCAATGCAACGGCTGCGGACGGGCGAGTCGTCGAATCCGAAGAAA
TTAAATGTCAGCCAACAGCCCGTTACATCAGTAGCAACAACTAGGACTAC
AGCAAGCTCACTACCAGCAGAAACCACTTCTTCACCGGCAGCTGCAGTGC
GTCCTTATTCGGAAGTACCGGGTCCATACCCCTTGCCACTGATTGGCAAC
TCCTGGCGCTTCGCTCCACTAATAGGAACATACAAAATCAGCGACTTGGA
CAAGGTCATGAATGAGCTGCATGTCAACTATGGGAAGATGGCCAAAGTGG
GCGGTCTCATTGGTCATCCCGATCTGCTGTTCGTCTTCGATGGCGATGAG
ATTCGTAACATATTCAAGAAGGAGGAGGCGATGCCGCATCGACCGTCGAT
GCCCTCACTGCGCCACTACAAGGGCGACCTGCGACGCGATTTCTTTGGCG
ATGTGGCCGGCCTAATTGGCGTGCATGGCCCCAAGTGGGAGGCCTTCAGA
CAGGAGGTGCAGCACATCCTGCTGCAGCCGCAGACCGCCAAGAAGTACAT
TCCGCCGCTAAATGACATTGCCAGCGAGTTTATGGGCCGTATCGAGCTGA
TGCGCGACGAAAAGGACGAGCTGCCAGCCAATTTCCTGCACGAGCTCTAC
AAATGGGCCTTGGAATCTGTCGGTCGCGTTTCCCTGGACACGAGATTGGG
CTGTTTGTCCCCCGAGGGCAGCGAAGAGGCCCACAGATCATAGAGGCTAT
CAACACATTTTTCTGGGCCGTTCCGGATTGGAGCTGCGAATGCCGCTATG
GCGAATATATCCCACCAAGCATAAGGAGCTTCGTCAAGGCTTTGGATCAG
TCACAGCATTTGCATGAGAACATTGGCAGACCATGGACAAAGCCGATGTC
GATGAGCTAGAGATTGTCCATCGAGGCGAATTATCATTGGGACGGATTGC
CAAGACGGCATCGCAACTGTGCATTGCACTGGAATGTTT
FMO13317.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp49a1-RE | 2591 | CG18377-RE | 485..1556 | 9..1070 | 5080 | 98.9 | Plus |
| Cyp49a1-RD | 2297 | CG18377-RD | 191..1262 | 9..1070 | 5080 | 98.9 | Plus |
| Cyp49a1-RA | 2351 | CG18377-RA | 245..1316 | 9..1070 | 5080 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10455925..10456127 | 211..9 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 10455522..10455696 | 376..202 | 845 | 98.9 | Minus |
| 2R | 25286936 | 2R | 10455284..10455451 | 541..374 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 10451230..10451418 | 1001..817 | 745 | 97.9 | Minus |
| 2R | 25286936 | 2R | 10452088..10452204 | 739..623 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 10452297..10452379 | 623..541 | 415 | 100 | Minus |
| 2R | 25286936 | 2R | 10451923..10452000 | 816..739 | 390 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1102..1163 | 225..286 | 121 | 66.1 | Plus |
FMO13317.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:37 Download gff for
FMO13317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp49a1-RA | 241..1323 | 9..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:04 Download gff for
FMO13317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp49a1-RA | 245..1327 | 9..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:17 Download gff for
FMO13317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp49a1-RA | 245..1327 | 9..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:17 Download gff for
FMO13317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10455925..10456127 | 9..211 | 100 | | Minus |
| 2R | 10455523..10455686 | 212..375 | 100 | <- | Minus |
| 2R | 10452298..10452378 | 542..622 | 100 | <- | Minus |
| 2R | 10455284..10455449 | 376..541 | 100 | <- | Minus |
| 2R | 10451223..10451418 | 817..1007 | 97 | <- | Minus |
| 2R | 10451923..10451999 | 740..816 | 100 | <- | Minus |
| 2R | 10452088..10452204 | 623..739 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:04 Download gff for
FMO13317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6338728..6338923 | 817..1007 | 97 | <- | Minus |
| arm_2R | 6339428..6339504 | 740..816 | 100 | <- | Minus |
| arm_2R | 6339593..6339709 | 623..739 | 100 | <- | Minus |
| arm_2R | 6339803..6339883 | 542..622 | 100 | <- | Minus |
| arm_2R | 6342789..6342954 | 376..541 | 100 | <- | Minus |
| arm_2R | 6343028..6343191 | 212..375 | 100 | <- | Minus |
| arm_2R | 6343430..6343632 | 9..211 | 100 | | Minus |
