FMO13318.5prime Sequence
1151 bp (1035 high quality bases) assembled on 2013-02-11
> FMO13318.5prime
CAGTCGACATGCAGAAAATGCCCTCGCAAATTCTGAACGACGGCAGCAGC
GTCAGCTTGAATAGCGCCAGTATGAACATGGCCAATACGCCCAATAGTAT
AACGGTAAAGACCGCCTACAATGGCCAGATTATCATTACCACCATCAACA
AGAATATCTCATACGAGGAGCTGTGCTACGAGATTCGCAACATTTGTCGA
TTTCCTCTGGATCAGCCATTTACCATCAAATGGGTAGATGAGGAAAACGA
TCCCTGCACCATATCAACGAAAATGGAATTGGACGAGGCCATACGACTTT
ACGAAATGAACTTCGATTCCCAGTTAGTCATTCATGTATTTCCCAATGTT
CCTCAAGCGCCGGGATTGTCTTGCGATGGCGAAGATCGCAGCATCTATCG
ACGCGGTGCTCGACGCTGGCGCAAGTTGTATCGCGTCAACGGACACATCT
TCCAGGCCAAGCGTTTCAACCGGCGTGCTTTCTGTGCCTACTGCCAGGAT
CGAATCTGGGGTTTGGGACGTCAGGGTTTCAAGTGCATCCAGTGCAAGCT
GTTGGTGCACAAGAAGTGCCATAAGCTTGTGCAGAAGCACTGCACCGACC
AGCCGGAGCCGCTGGTCAAGGAGCGGGCGGAGGAGTCCAGTGACCCTATA
CCGGTGCCTTTGCCGCCACTTCCCTACGAAGCGATGAGCGGCGGAGCCGA
AGCCTGCGAGACGCACGACCATGCGCACATAGTGGCGCCACCGCCACCGG
AGGATCCATTGGAGCCGGGCACTCAGCGCCAGTATTCGCTGAACGACTTC
GAGCTGATACGGGTCATCGGACGCGGCAGCTATGCCAAGGTGCTAATGGT
GGAGCTACGACGCACACGGCGCATCTACGCCATGAAGTGATCAAGAAGCG
CTGGTCACCGACGACGAGGACATCGACTGGTGCAAACGGAGAAGCATGTG
TTCGAGACGGCCTCGAACCACCCGTTCCTGTCGATTGCACCTCGTGCTTC
CAGACCGCCCTCGCGCTCTTCTTTGTTCATCGAGTTTGGTGCGCGGTGGC
GATTTGATGTACCACATGCAGCGCAACGGCGCCTGCCCGAGAGCACGCCC
GTTTCTATGCAGCCCGAGAAATCAGTTTGGGCCTGAATTTCTTCGAGAAG
C
FMO13318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aPKC-RA | 3240 | CG42783-RA | 343..1476 | 9..1141 | 5295 | 98.4 | Plus |
| aPKC-RD | 3320 | CG42783-RD | 151..1284 | 9..1141 | 5295 | 98.4 | Plus |
| aPKC-RC | 2392 | CG42783-RC | 221..1354 | 9..1141 | 5295 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14948182..14948851 | 1141..473 | 2650 | 96.9 | Minus |
| 2R | 25286936 | 2R | 14961568..14961774 | 215..9 | 1035 | 100 | Minus |
| 2R | 25286936 | 2R | 14961386..14961508 | 336..214 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 14948917..14949002 | 473..388 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 14949373..14949425 | 388..336 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:30:40 has no hits.
FMO13318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:38 Download gff for
FMO13318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aPKC-RC | 310..1457 | 1..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:08 Download gff for
FMO13318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aPKC-RC | 211..1358 | 1..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:21 Download gff for
FMO13318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aPKC-RC | 211..1358 | 1..1144 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:21 Download gff for
FMO13318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14948178..14948850 | 474..1144 | 97 | <- | Minus |
| 2R | 14948917..14949002 | 388..473 | 100 | <- | Minus |
| 2R | 14949374..14949424 | 337..387 | 100 | <- | Minus |
| 2R | 14961386..14961506 | 216..336 | 100 | <- | Minus |
| 2R | 14961568..14961779 | 1..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:08 Download gff for
FMO13318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10835683..10836355 | 474..1144 | 97 | <- | Minus |
| arm_2R | 10836422..10836507 | 388..473 | 100 | <- | Minus |
| arm_2R | 10836879..10836929 | 337..387 | 100 | <- | Minus |
| arm_2R | 10848891..10849011 | 216..336 | 100 | <- | Minus |
| arm_2R | 10849073..10849284 | 1..215 | 98 | | Minus |
