FMO13321.5prime Sequence
1094 bp (1019 high quality bases) assembled on 2013-02-11
> FMO13321.5prime
CAGTCGACATGGCTGGAAGAGGTGGTTATGAACACGCTAGAAGCGGATTC
GGTGGGGATCGGGCATCCAAGCAGTTGCCCACGGAACCGCCGTTCATCGC
ATTTGTCGGCAATTTGCCGCAAGGCCTTGTGCAGGGCGATGTGATCAAAA
TATTCCAGGACTTTGAGGTGAAGTACGTGCGGCTGGTGAAGGACCGGGAA
ACGGATCAGTTCAAAGGCTTCTGCTACGTCGAATTCGAGACGCTGGACAA
TCTGGAGCGGGCGCTAGAGTGCGATGGTCGGATCAAACTGGACGATCTGT
CGGCGCCGCTAAGGATCGACATTGCCGATCGGAGAAAAAATGATCGCCCT
GGTGGCGGTGTTGGCGGCGGCAACGGCGGCATGACCCGCGGCGACGGCGG
CAGAGACGGTTTCCAGAAGCGCGGCCCACCTCGCCAGGGCGGCAGCAGTC
AGTCCTACAGCCGGGGAGGTCCTGGCACTGGCGGCGGCGGTCGGGAGGGC
GGCGGCGGTTCGGGTAATCGCGGCGATAGTAGAGGTTCGTACATTGATAG
TTATGGTGGTCACAATGATAGAAGTCGCGGCGTCGGCGGCAGCGGCGCGG
GCTCCGGCGGTGGCATGAATAGAGGATACAATGATCGGCCGGCAAATCGT
GGTCGGTACGGCAGTTTCAATAACGACGATCGACCATTCGAGCGTAACCA
GGATCGGGATCGCGGTCAGCGGGAAGGCAGCTATGGCAACCAGTCGCGCG
ACGGCGATCGCTACAACAACTTCAACCGGCACCGCGACCGCGAGCGCACC
CACTACAATCCCAACCAGCAGAGCGAACGTCCCAGTGGCGGCATGACCGG
GCCTTGGCGGCGGCTCCGGCGGATCAGAGCCTAGCGTTGGCGGTGGTTCC
TCATGGGCGCCATTGACGACATGAGCGGCCACGTCTGCAGCTGAAGCCAC
GGACCATTGCCGCGCCATTAACGCGGTGCAGAGACCAAGCATCGGCCTCG
ATCTTTGGCCACGCCAGCCGCGCCGAAGAGAAGCTGAAGGAGCTGCAGCA
GAATGTTCAATCCCACGGCGATACGCCAGCTTTCTAGAACCCAT
FMO13321.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp2-RC | 2640 | CG4429-RC | 32..1105 | 7..1073 | 5030 | 98.6 | Plus |
| Rbp2-RD | 2730 | CG4429-RD | 32..945 | 7..917 | 4450 | 99.5 | Plus |
| Rbp2-RA | 3898 | CG4429-RA | 32..559 | 7..534 | 2640 | 100 | Plus |
| Rbp2-RD | 2730 | CG4429-RD | 1034..1195 | 916..1073 | 590 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16449872..16450179 | 39..346 | 1540 | 100 | Plus |
| X | 23542271 | X | 16450313..16450600 | 346..633 | 1440 | 100 | Plus |
| X | 23542271 | X | 16451274..16451559 | 633..915 | 1205 | 97.9 | Plus |
| X | 23542271 | X | 16451925..16452063 | 921..1056 | 440 | 92.8 | Plus |
| 3R | 32079331 | 3R | 30726475..30726649 | 72..246 | 350 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:30:55 has no hits.
FMO13321.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:40 Download gff for
FMO13321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RC | 20..1093 | 7..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:16 Download gff for
FMO13321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RC | 32..1105 | 7..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:27 Download gff for
FMO13321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RC | 32..1105 | 7..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:27 Download gff for
FMO13321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16448696..16448729 | 7..40 | 100 | -> | Plus |
| X | 16449874..16450179 | 41..346 | 100 | -> | Plus |
| X | 16450314..16450600 | 347..633 | 100 | -> | Plus |
| X | 16451275..16451559 | 634..915 | 98 | -> | Plus |
| X | 16451919..16452061 | 916..1054 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:16 Download gff for
FMO13321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16342729..16342762 | 7..40 | 100 | -> | Plus |
| arm_X | 16343907..16344212 | 41..346 | 100 | -> | Plus |
| arm_X | 16344347..16344633 | 347..633 | 100 | -> | Plus |
| arm_X | 16345308..16345592 | 634..915 | 98 | -> | Plus |
| arm_X | 16345952..16346094 | 916..1054 | 95 | -> | Plus |
