FMO13322.5prime Sequence
1138 bp (1045 high quality bases) assembled on 2013-02-11
> FMO13322.5prime
CAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATTTCTACTGG
AATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCCAACTACAA
TCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGGCCAGATCA
TTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGCTGACGGTG
CCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTT
GGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTATCGTCGGG
AGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGGCGGTTTTT
GCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTGAACCGGAT
CAGCACCAAGACTTATCTGGCCGGAATCCATTCGCCGAATCGCGAAATGC
CGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGACGTCTGGAA
GGAGATGCCACTGATGCGAGAACAGGATCGACCGAGAAGCGAATCACCTT
CACCCTGGCTCCCAGTTCGGCCGAATGCTCGCCGTCGGGTAGCCAAACGA
CACTTACTCCCAAAAAGTTCGAGGCCATTGCCGAGGAGGAGAAGGAGGAC
GACAAGGCCGATGAGGAGGAGGAGATCATGGAGGAGGTGGTGCTGCGACC
TCGCCTCATCGACCGGCATCCTCATCTGCTGGCCAACCCCAGTGGACTGA
CGACCACGCCCAAACGGATCCTGCGATCCGCCAAGAGCGTTCCGCACATG
AATGTCCGTTCGTCGGCCAGTGAGACGGATATATTCTCCATTAGCGGTAC
GATGACCGGAAGCAGTCAGATCAGCATGACGCCCGGAGTGCCATCGATAT
CGTTCAGTAATCTGCCTAAGACTACGAGGACACGCCCACTATTGAGAAGT
ACCGGGTATCGCAGAGTCTCTATTCAATCAACGGCGAATGCTGCTCGGGC
CACACAGGATGATTACTCCATGCCGCGCTACTTTCGTCGATCTGCCATGC
TATGGACCCAAAGCCTCTGAGGTGCTGCCGGGGCCAGTTTCACTGGGCCT
CCATGATCGCCATCGATGGGCCCGCTCCTGGCCTTGCC
FMO13322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17834-RE | 1749 | CG17834-RE | 275..1385 | 9..1119 | 5240 | 98.6 | Plus |
| CG17834-RC | 1844 | CG17834-RC | 370..1480 | 9..1119 | 5240 | 98.6 | Plus |
| CG17834-RA | 2034 | CG17834-RA | 560..1670 | 9..1119 | 5240 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8540456..8541075 | 500..1119 | 2640 | 96.8 | Plus |
| 2L | 23513712 | 2L | 8537229..8537464 | 267..502 | 1165 | 99.6 | Plus |
| 2L | 23513712 | 2L | 8536893..8537071 | 90..268 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 8536207..8536268 | 29..90 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:29:48 has no hits.
FMO13322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:29 Download gff for
FMO13322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RA | 551..1683 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:32 Download gff for
FMO13322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RA | 553..1685 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:54 Download gff for
FMO13322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RA | 553..1685 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:54 Download gff for
FMO13322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8536207..8536268 | 29..90 | 100 | -> | Plus |
| 2L | 8536894..8537071 | 91..268 | 100 | -> | Plus |
| 2L | 8537231..8537463 | 269..501 | 99 | -> | Plus |
| 2L | 8540458..8541090 | 502..1134 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:32 Download gff for
FMO13322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8536207..8536268 | 29..90 | 100 | -> | Plus |
| arm_2L | 8536894..8537071 | 91..268 | 100 | -> | Plus |
| arm_2L | 8537231..8537463 | 269..501 | 99 | -> | Plus |
| arm_2L | 8540458..8541090 | 502..1134 | 96 | | Plus |
