FMO13323.5prime Sequence
1161 bp (1032 high quality bases) assembled on 2013-02-11
> FMO13323.5prime
CAGTCGACATGCAGAGCCTACCACTACCAGGAGATGAAGCCATAGGCTTG
CTACCCTCTCAGTCAGAAAGCTTTTCCATTTGGGTCAACGGCGAGGAGCA
CTGGATATCCGGTGCGGACTCAAGCACCACCTGCGCAGATCTAATATGCG
CGTTAATCAGCTACCAAATAGACCAGAAACATGTGCTCAGCAAGGAAGAA
ATACTCGCTCCACAGCAATTTGCTATTGTCCAAAAGCAGCGTCACTACGA
GGAGTATTTGGATAGTAGTGCCAGGCTCCTTGATGTTATAACCAGCCCTC
ACGCAATGCCGAAAGAGGAATACCAGCTACATCTTCGTCACTTGGCCACT
TCAAGTCGAAAGCAAGTCCCGACGACCGATAAGGACAGTGGAATGGGCAG
TCCAGTAGATAGTTCGCGGAGCATGCGCATCCGGCGGAGGGGCAAGCTTC
TCTCCACTAAGACCACAGACAATATCAACACTAAGCAGTCGAAGAGAAGC
CGGAAGCAGCAGCAGAGGAACCACCACTTAACTCCGAACGAGAGCCTGCT
TACCATTATCCTTGCCCAAGATGAAACCATTCTGCAGCAAATGACCATGT
TGCACGAAAAGGATCGACAGATTTTTAAAATCGAGGAGGAGAAGCACCAG
GTGAGGGAGCGAGAGCTGGGTAAAAACTACCTCCTTGAGACGTACTTAAA
GGACTTGGATGAGCCCCAAGAAAAGGGCGAAGACCTGGAACTGTTTGAAG
AAATGACACACATAGACGTAGATCGAGACTTTGGTATAATGTCAGATAGT
ACCGTCCAAACTGCGTTAAATAGTGGCACTATGCACGACGACATCCGGCT
TTACTGGCTGGAAAAGATTCACGAGGTAAACAAAGAGCTGCAATGTGAAG
AGGAACTTTTACTCAGCCTGCACTCCAGGTACGTAGACACCAGTGAAGCG
GGCGTACCAAACGAGAGCGAGTGCTACTACAATCGAAGACTCGATAAGAG
TGGCTACTCAGGTGGCGGAAATCCACCATGTGGACGAAAACTTTCCACGG
CCATGAACAGCTTAAGCCAACTGCTGTTTCTTGATGTTTGGAGTCTGGAT
TTGGAAACTACGTATTCTGGAAGGCGTCAGAGGTAATGTGCACTGGCAGA
CAATGCAGGTG
FMO13323.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13875-RB | 1686 | CG13875-RB | 107..1274 | 9..1161 | 5090 | 97.1 | Plus |
| CG13875-RA | 1975 | CG13875-RA | 396..1563 | 9..1161 | 5090 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 180777..181088 | 9..320 | 1560 | 100 | Plus |
| 3L | 28110227 | 3L | 181148..181431 | 321..604 | 1420 | 100 | Plus |
| 3L | 28110227 | 3L | 181490..181680 | 605..795 | 955 | 100 | Plus |
| 3L | 28110227 | 3L | 181741..182022 | 794..1065 | 865 | 95.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:29:54 has no hits.
FMO13323.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:30 Download gff for
FMO13323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13875-RA | 387..1488 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:36 Download gff for
FMO13323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13875-RA | 389..1490 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:59 Download gff for
FMO13323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13875-RA | 389..1490 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:59 Download gff for
FMO13323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 180770..181088 | 1..320 | 98 | -> | Plus |
| 3L | 181148..181431 | 321..604 | 100 | -> | Plus |
| 3L | 181490..181680 | 605..795 | 100 | -> | Plus |
| 3L | 181743..182050 | 796..1090 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:36 Download gff for
FMO13323.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 180770..181088 | 1..320 | 98 | -> | Plus |
| arm_3L | 181148..181431 | 321..604 | 100 | -> | Plus |
| arm_3L | 181490..181680 | 605..795 | 100 | -> | Plus |
| arm_3L | 181743..182050 | 796..1090 | 94 | | Plus |
