FMO13325.5prime Sequence
1124 bp (1023 high quality bases) assembled on 2013-02-11
> FMO13325.5prime
CAGTCGACATGGCGCATTTTCGTAATGGCCAGGAAATACCCATGATATTG
GTCGGAACGCAAGACGCCATCAGCGAGCGCAATCCTCGCGTGATTGACGA
CACCCGTGCCAGGAAATTGGCCAGCGATCTGAAGCGTTGCTCCTACTACG
AGACCTGCGCCACCTACGGCCTGAATGTGGAGCGTGTCTTTCAGGATGCC
TGTCAAAAGATCCTCTCGCAGCGCCTGCCTTTGCCACCACAGGTGCAACC
GGCGAGACCCACGACTCCGCAGGGCAATCGCCTGGGATTGGCTCCCTACC
AGGCGCCCACCAATGGACAACGTGGCCAGCAGCAGCTACCACTGCGAATG
AGTGCGGATTTCGCACAGGCGGAGCAGAAACTTTGGTCGCTGCAAGCGGC
CAGCAGTTCCACCATAAACGAGAATAACAACATCACCAAATACAATCCCG
GAGCGGCCAATTCGCTGCAGGGTGATTGCTCCCAGGTGCAGTTGCGCGAT
CCACGTGATCTGGCGCCACCACCGGGTAAGGAGCTGCCCACACCCACCTC
GACGCCCACGACGAGCCGCAAGAGCCGGCGGCGTTCGAACCTCTTCATCC
CCTCCTCTTCGAAGAAGGCCGACAAGGAGAAGGAGCCAAAGAGCAGTGAA
CTGGGCAGTGGACGTTCCATACCCATTAAACAGGGCTACCTGTACAAACG
CTCTAGCAAATCCTTGAACAAGGAGTGGAAGAAGAAGTATGTGACCCTGT
GCGACGACGGCAGGCTTACCTATCATCCCTCTTTGCACGACTATATGGAC
GATGTGCACGGCAAGGAGATTCCGCTGCAGTACGTCACCGTAAAGGTGCC
GGGACAGAAACCTCGTGGCTCCAAGAGCATAATCACGAACAGTGCGCTCA
CCAGTTCACTGATGGCCAATGGCCAAAGAGCTCAGACACTCTGAGCGATG
GCATCGGTTGTCTCCACCCTGCAGACATCAGCGCAGCTGAGCGAGAAATT
ATCCCTACTCGGAGCCGATCCATTGCAGCTGGTGCGTGAAAGCCTTTGAG
TCGGAATAGCTACAAGCGACGGCGGGTGACCAGGCCCTGCCATGTCATCC
ATCCGAACTTTATCGCGAAGTTGC
FMO13325.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenG1A-RC | 3516 | CG31811-RC | 262..1324 | 9..1061 | 4990 | 98.6 | Plus |
| CenG1A-RA | 3869 | CG31811-RA | 1071..2133 | 9..1061 | 4990 | 98.6 | Plus |
| CenG1A-RB | 4444 | CG31811-RB | 1190..2252 | 9..1061 | 4990 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13895456..13896300 | 198..1035 | 3875 | 98.3 | Plus |
| 2L | 23513712 | 2L | 13895253..13895389 | 62..198 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 13895116..13895170 | 9..63 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:31:22 has no hits.
FMO13325.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:45 Download gff for
FMO13325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cenG1A-RB | 1187..2237 | 9..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:33 Download gff for
FMO13325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenG1A-RB | 1190..2240 | 9..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:42 Download gff for
FMO13325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenG1A-RB | 1190..2240 | 9..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:42 Download gff for
FMO13325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13895116..13895170 | 9..63 | 100 | -> | Plus |
| 2L | 13895255..13895389 | 64..198 | 100 | -> | Plus |
| 2L | 13895457..13896333 | 199..1064 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:33 Download gff for
FMO13325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13895116..13895170 | 9..63 | 100 | -> | Plus |
| arm_2L | 13895255..13895389 | 64..198 | 100 | -> | Plus |
| arm_2L | 13895457..13896333 | 199..1064 | 98 | -> | Plus |
