FMO13326.5prime Sequence
692 bp (692 high quality bases) assembled on 2013-02-11
> FMO13326.5prime
CAGTCGACATGACACTAAGATCCAAAGCCATCATGACATCCACCAGCGAT
AAGCGCGAGCATCTGTACAAGATTCTAGTCATTGGTGAACTGGGCACCGG
CAAGACGTCCTTCATTAAGCGCTATGTGCACCAGTTCTTCAGCCAGAACT
ACAGGGCCACCATCGGCGTGGACTTCGCCCTGAAAGTGCTGCAGTGGGAC
GCCAATACGATAGTGCGCCTCCAGCTGTGGGATATCGCCGGTCAGGAGAG
GTTTGGCAACATGACCCGTGTCTACTACAAGGAGGCGGTGGGCGCGTTCA
TCGTTTTTGATGTGACTCGCAGTGGGACTTTCGATTGCGTGAGCAAGTGG
AAGGAAGATCTAGACTCCAAGGTGCAGCTGCCGGACGGCAGTCCCATTCC
GTGCATCCTGCTGGCCAATAAATGCGACCAGGAAAAGCAGGGCATCATAA
CGCAGCCCGAGAAGATGGATGAGTATGTGAGGGAGAACGGATTTGCCGGT
TGGTTTGAGACATCCGCCAAGGAGAATATCAACATCGATGAGGCAGCTCG
TGCCCTCGTGAATAAGATACTCATCAACGATAAGCTGATATCTGCCGATC
TGGCCGATGGCGACAAGTTCAACTTGAGCGCGGCCGATGCAACCGGATCG
GATGCCAAGAACAAGTGTTCCTGCGCAAGCTTTCTAGACCAT
FMO13326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RD | 1448 | CG8024-RD | 210..875 | 9..674 | 3330 | 100 | Plus |
| ltd-RC | 2347 | CG8024-RC | 1126..1774 | 26..674 | 3245 | 100 | Plus |
| ltd-RE | 2156 | CG8024-RE | 935..1583 | 26..674 | 3245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9178830..9179225 | 422..27 | 1980 | 100 | Minus |
| 2R | 25286936 | 2R | 9178606..9178749 | 566..423 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 9178437..9178546 | 674..565 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:31:28 has no hits.
FMO13326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:46 Download gff for
FMO13326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RD | 200..877 | 2..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:36 Download gff for
FMO13326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RD | 204..881 | 2..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:46 Download gff for
FMO13326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RD | 204..881 | 2..681 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:46 Download gff for
FMO13326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9178830..9179225 | 27..422 | 100 | <- | Minus |
| 2R | 9178431..9178544 | 567..681 | 96 | <- | Minus |
| 2R | 9178606..9178749 | 423..566 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:36 Download gff for
FMO13326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5065936..5066049 | 567..681 | 96 | <- | Minus |
| arm_2R | 5066111..5066254 | 423..566 | 100 | <- | Minus |
| arm_2R | 5066335..5066730 | 27..422 | 100 | <- | Minus |
