FMO13331.5prime Sequence
1119 bp (1026 high quality bases) assembled on 2013-02-11
> FMO13331.5prime
CAGTCGACATGGCCCCGCCAAAGGCCGCCAGCCACCGTCCGGCGGTGCGG
CGCAAGAAGTCGGGCACCCTGGTGGACTCCATCCTGGACAAGTACCTCAA
CGTGCGCTTCTTCAAGTATCTGCTCCTGGAGCCGGCCGCTCTGCCCATAG
TTGGCCTCTTCGTGCTCCTGGCGGAGCTGGTCATCAACGTGGTGGTCATC
CAGCGGGTGCCCTACACAGAGATCGACTGGGTGGCTTACATGCAGGAGTG
CGAGGGCTTCCTGAACGGCACCACCAACTACAGTCTGTTGCGCGGCGACA
CAGGACCTCTTGTGTATCCAGCCGCCTTCGTGTATATCTACTCGGCTCTC
TACTACGTCACGTCCCACGGAACGAACGTTCGCCTGGCGCAGTACATCTT
CGCCGGGATCTACCTGCTCCAGCTGGCCCTGGTGCTGAGGCTGTACTCGA
AGAGCAGAAAGGTGCCGCCGTATGTGCTAGTGCTCAGTGCCTTCACGTCG
TATCGGATCCACTCGATATACGTGCTGCGACTGTTCAACGATCCGGTGGC
AGTGCTGCTCCTCTATGCCGCACTCAATTTGTTCCTGGACAGAAGGTGGA
CCCTGGGTAGCACCTTCTTCAGCTTGGCGGTGGGCGTTAAGATGAACATC
CTGCTGTTTGCGCCTGCGCTCTTGCTGTTCTACTTGGCCAACCTGGGACT
TCTGCGGACGATCCTGCAGCTGGCTGTCTGCGGAGTGATACAACTGCTGC
TGGGCGCTCCTTTCCTGCTCACCCATCCTGTGGAGTATCTGCGGGGCAGC
TTTGATTTGGGACGCATCTTCGAGCACAAGTGGACGGTCAACTATCGCTT
CCTGAGCAGAGATCTGTTCGAGAACCGCACCTTCCACGTTTCGCTTTTGG
GCCTGCATCTGCTGCTCCTGCTGGCCTTCGCCAAGCCACTTGGACCTTTT
TCCAGAGCTACGTGCGCCTGCGTCGTATTGAGATCAGCTGCAGCCGCAAA
TAGCCCAGCAGACCTCGAGCTGAACGCGCCAAAAAGACCCAGATGGAAAA
AGACAGACAGACCGAAAGTTCAACCGACACCATTCTTCTCTGAAGGCCTT
CGAAAGAGCTTGCGAAAGG
FMO13331.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)not-RA | 1704 | CG4084-RA | 80..1202 | 9..1113 | 5045 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23706030..23706778 | 1039..294 | 3535 | 99.1 | Minus |
| 2R | 25286936 | 2R | 23709427..23709713 | 295..9 | 1435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:00 has no hits.
FMO13331.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:51 Download gff for
FMO13331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)not-RA | 1869..2899 | 1..1029 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:55 Download gff for
FMO13331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)not-RA | 73..1103 | 1..1029 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:02 Download gff for
FMO13331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)not-RA | 73..1103 | 1..1029 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:02 Download gff for
FMO13331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23706040..23706777 | 295..1029 | 99 | <- | Minus |
| 2R | 23709428..23709718 | 1..294 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:55 Download gff for
FMO13331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19593563..19594300 | 295..1029 | 99 | <- | Minus |
| arm_2R | 19596951..19597241 | 1..294 | 98 | | Minus |
