Clone FMO13332 Report

Search the DGRC for FMO13332

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:133
Well:32
Vector:pMK33-CFH-BD
Associated Gene/TranscriptAtg12-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13332.5prime Sequence

359 bp (359 high quality bases) assembled on 2013-02-11

> FMO13332.5prime
CAGTCGACATGGCAGAGACACCAGAATCCCAGGCAGCGCTGAGCACTTCC
TCCTCCACACCTGCAGATAAGGATGGTTCCAAAATTTGTATCCTTCTGAA
CGCCACTGGCAATGTGCCCATCATCAAAAAGCGAACCTGGACCGTAGATC
CCAACAAGACAGTCGGCTGGATACAGACGTTCATCCACAAGTTTCTGAAA
CTCGATGCCAGCGAGCAAATTTTCCTGTACGTTAATCAGACATTTGCACC
TGCCCCGGATCAGATAATCAAGAACTTGTACGAGTGCCATGGAACCAATG
GGAAACTGGTGCTCTACTACTGCAAGAATCAGGCGTGGGGCGCAAGCTTT
CTAGACCAT

FMO13332.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Atg12-RB 469 CG10861-RB 50..382 9..341 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12137159..12137295 85..221 685 100 Plus
3L 28110227 3L 12137353..12137472 222..341 600 100 Plus
3L 28110227 3L 12137016..12137091 9..84 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:32:03 has no hits.

FMO13332.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:53 Download gff for FMO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg12-RB 243..578 9..345 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:58 Download gff for FMO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg12-RB 50..385 9..345 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:04 Download gff for FMO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg12-RB 50..385 9..345 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:04 Download gff for FMO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12137016..12137091 9..84 100 -> Plus
3L 12137159..12137295 85..221 100 -> Plus
3L 12137353..12137475 222..345 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:58 Download gff for FMO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12130116..12130191 9..84 100 -> Plus
arm_3L 12130259..12130395 85..221 100 -> Plus
arm_3L 12130453..12130575 222..345 98   Plus