Clone FMO13333 Report

Search the DGRC for FMO13333

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:133
Well:33
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12012-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13333.5prime Sequence

392 bp (392 high quality bases) assembled on 2013-02-11

> FMO13333.5prime
CAGTCGACATGGCAGATACCCGTAAAGACGCCGCGCCGCCGAGCTACGAA
GAAGTCATGAACAGTCCCTCGCAGGATTCCCGGCTGATAGTGGGCGTGCA
TCAGGGAGCACCTAGTGCTCCGCCACCAAACATGCACATGCCAACCTACG
GAGCTTTCGAGACGACGCCGGTCAGCGTGGTGATTCAGCCTGCTCCGGTC
GCTATGCCCACCGAGATCATCGTGATTGGAGGATGCCCTGCATGTCGGAT
TGGATACCTGGAGGACACCTTCTCCGCCTGCGGACTGTGCTGCGCAATCT
TCTTCTTCCCGCTGGGAATTCTCTGTTGCTTGGCCATGCGTGAGAAGCGC
TGTTCCAACTGCGGAACGGTTTTCGCAAGCTTTCTAGACCAT

FMO13333.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12012-RC 1185 CG12012-RC 125..490 9..374 1830 100 Plus
CG12012-RA 880 CG12012-RA 125..490 9..374 1830 100 Plus
CG12012-RB 931 CG12012-RB 242..541 75..374 1500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3376998..3377297 75..374 1500 100 Plus
3L 28110227 3L 3376881..3376947 9..75 335 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:32:11 has no hits.

FMO13333.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:54 Download gff for FMO13333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12012-RA 116..490 1..374 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:02 Download gff for FMO13333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12012-RA 116..490 1..374 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:07 Download gff for FMO13333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12012-RA 116..490 1..374 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:07 Download gff for FMO13333.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3376872..3376947 1..75 94 -> Plus
3L 3376999..3377297 76..374 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:02 Download gff for FMO13333.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3376872..3376947 1..75 94 -> Plus
arm_3L 3376999..3377297 76..374 100   Plus