FMO13334.5prime Sequence
350 bp (350 high quality bases) assembled on 2013-02-11
> FMO13334.5prime
CAGTCGACATGACTAAGACAACGATGCATTGGCTGGCTCACTTCCAGATC
ATCTTGCTATGCATTTGGTTGATGTGCCCCCCCAGTTCGCAGGCCATAAA
ATGCGACACTTGTGGCAAGGAGTGTGCCAGCGCATGTGGCACAAAGCACT
TTCGCACATGCTGCTTTAACTACCTTCGCAAGCGATCCGACCCCGATGCA
CTGCGTCAGAGCTCGAACAGGAGGCTCATCGACTTCATACTGCTGCAGGG
GCGTGCCCTCTTCACCCAGGAGTTGCGAGAAAGGCGCCACAATGGCACAT
TGATGGACCTCGGCCTGAACACCTACTACCCCGCAAGCTTTCTAGACCAT
FMO13334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trissin-RB | 551 | CG14871-RB | 61..384 | 9..332 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15484897..15485075 | 332..154 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 15485129..15485222 | 154..61 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 15485284..15485336 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader6 | 4885 | invader6 INVADER6 4885bp | 726..757 | 249..218 | 106 | 81.2 | Minus |
FMO13334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:42 Download gff for
FMO13334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14871-RB | 51..388 | 1..337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:20 Download gff for
FMO13334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trissin-RB | 51..388 | 1..337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:32 Download gff for
FMO13334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trissin-RB | 51..388 | 1..337 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:32 Download gff for
FMO13334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15484893..15485074 | 155..337 | 98 | <- | Minus |
| 3R | 15485129..15485222 | 61..154 | 100 | <- | Minus |
| 3R | 15485285..15485342 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:20 Download gff for
FMO13334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11310615..11310796 | 155..337 | 98 | <- | Minus |
| arm_3R | 11310851..11310944 | 61..154 | 100 | <- | Minus |
| arm_3R | 11311007..11311064 | 1..60 | 93 | | Minus |
