FMO13337.5prime Sequence
725 bp (725 high quality bases) assembled on 2013-02-11
> FMO13337.5prime
CAGTCGACATGGTAGAGGGCATGATAAAAAAGCTAACTGCTATTTTATTT
GGGCTTGTATTGGCTGTGTTATTTCGAGTAATTATACCCTTTACTCTGCG
ACTTAAAAGCGCTGAAATAACCATTAATGTGCTTAACTGTTTTAATTTTC
TAACAAGTACCGTTTCCATTACCATTTGCCTGAATTTGGTCAGCCTATAC
TTAGCCAATTTGCGTGATGATTGGCTTGTTCTCGGGCTTATACCGCTGCA
GATACTCGTCCTTCATTGGACTTACTTCACAATTTCAAAACAACTAGAAG
CCATGAACAGGAGCTATAGTACATTCATGGATAGCTTAAACCTTAAATGG
CTGGCATACTCCAATTTTAACGAGACAGATTGGCCTTCGATTGAAAATGC
GGTTTTATGCTGTGGACTGGAGGGTCCCCGTTCTTATATGGATTATCTAC
AAGGGGTTCCAACCCACTGCTACCATCCCGACCTTATCACCCAAGGTTGC
AGTGACTTTGTTAAAAACATTTTTATGCCGATACAACATATAAGTCATTT
GCAGCTCAGATTGGCTATTTTTGTGGAACTGGTAATTTTACTTATTCTTG
CTGCAACGCTTTTGAAGAAATGTATTTCTTTGATCGGCGAAAGGAAACAT
AAAAGAGTTATTACACACGGGCTTGCGGTACTAATAGATTTAGTTAAAAA
CACATTTGCAAGCTTTCTAGACCAT
FMO13337.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31600-RA | 929 | CG31600-RA | 57..755 | 9..707 | 3495 | 100 | Plus |
| CG31600-RB | 914 | CG31600-RB | 57..740 | 9..707 | 3260 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21914443..21914749 | 707..401 | 1535 | 100 | Minus |
| 2L | 23513712 | 2L | 21915016..21915199 | 236..53 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 21914800..21914967 | 403..236 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 21915258..21915302 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:23 has no hits.
FMO13337.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:56 Download gff for
FMO13337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31600-RA | 51..764 | 1..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:11 Download gff for
FMO13337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31600-RA | 51..764 | 1..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:13 Download gff for
FMO13337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31600-RA | 51..764 | 1..716 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:13 Download gff for
FMO13337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21914434..21914748 | 402..716 | 98 | <- | Minus |
| 2L | 21914802..21914966 | 237..401 | 100 | <- | Minus |
| 2L | 21915016..21915198 | 54..236 | 100 | <- | Minus |
| 2L | 21915258..21915308 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:11 Download gff for
FMO13337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21914434..21914748 | 402..716 | 98 | <- | Minus |
| arm_2L | 21914802..21914966 | 237..401 | 100 | <- | Minus |
| arm_2L | 21915016..21915198 | 54..236 | 100 | <- | Minus |
| arm_2L | 21915258..21915308 | 1..53 | 92 | | Minus |
