FMO13338.5prime Sequence
988 bp (988 high quality bases) assembled on 2013-02-11
> FMO13338.5prime
CAGTCGACATGGCCAAGACCAGCTTATGTCTGGTACCAATTCTCTGTCAA
TTTCTGGGACTACATGCCGCTTTGCTAGACTCTTTACTTAATCAGAGTAC
CATATACTACCTTAAACCATCAGCGGATGTTTCCCTGGAGAATGTGGAAC
AGTTGTCGTCTGTGGAATCTGTTAAGTTGATTGTCCACGGTTACCTGGGA
TCTTGCACCCATGGCTCTATAATGCCTCTGAGAAATGCCTATACTGCTCA
GGGATATGAGAATGTTTTGGTGGCTGACTGGGGTCCTGTGGCCAATCTAG
ATTATCCCAGTTCGCGATTGGCTGTGAAGAACGTGGCCCAGATTCTAGCC
AAATTATTGGAGGAATTCCTACAGCGCCATGGGATCTCCTTAGAAGGAGT
CCATGTCATAGGACACAGCTTGGGAGCTCATATCGCAGGACGAATTGGAC
GTTATTTCAACGGATCTTTGGGCAGAGTTACGGGTCTGGATCCGGCTCTT
CCCCTATTTTCAAGCCGATCGGATGATAGCTTGCACTCGAATGCCGCTCA
ATTCGTGGATGTGATTCACACGGACTATCCCTTGTTTGGCGACATTCGAC
CTCGAGGAACTGTGGACTTCTATCCGAATTTTGGACTGGCTCCACAGCCA
GGATGCGAAAATGTGGATGTTGTTGCTGCCAGTAAGCTACTCCACGAGGC
TTATAGTTGCAGTCACAAATCGAGCAGTCATGTTCTACGCTGAATCAATT
GGAATGCCTGAGAATTTTCCAGCGGTTTCTTGCAGTTTAACGGCCATTAA
AAGTCGGCGTGTAGAGGACTGCCTAAGGGAAAAATCAAAAACTAATACAG
AAAACGCAAATGATTATCAAACTGTCTTTATGGGCGAACATGTTAACCGC
AGCGCCACCTTGTACTATTATTTGGAAACTAATGGAGCGCACCCTACGGC
CAGGGCAGAACTCACATTTCGCAAGCTTTCTAGACAAT
FMO13338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10357-RC | 1111 | CG10357-RC | 10..975 | 6..970 | 4760 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3615697..3616162 | 237..702 | 2330 | 100 | Plus |
| 3L | 28110227 | 3L | 3615391..3615622 | 6..237 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 3616222..3616420 | 703..902 | 950 | 99.5 | Plus |
| 3L | 28110227 | 3L | 3616475..3616546 | 901..970 | 260 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:29 has no hits.
FMO13338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:58 Download gff for
FMO13338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10357-RC | 5..975 | 1..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:15 Download gff for
FMO13338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10357-RC | 5..975 | 1..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:17 Download gff for
FMO13338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10357-RC | 5..975 | 1..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:17 Download gff for
FMO13338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3616222..3616420 | 703..902 | 99 | -> | Plus |
| 3L | 3616477..3616546 | 903..970 | 97 | | Plus |
| 3L | 3615386..3615622 | 1..237 | 98 | -> | Plus |
| 3L | 3615698..3616162 | 238..702 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:15 Download gff for
FMO13338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3616222..3616420 | 703..902 | 99 | -> | Plus |
| arm_3L | 3616477..3616546 | 903..970 | 97 | | Plus |
| arm_3L | 3615386..3615622 | 1..237 | 98 | -> | Plus |
| arm_3L | 3615698..3616162 | 238..702 | 100 | -> | Plus |
