FMO13339.5prime Sequence
602 bp (602 high quality bases) assembled on 2013-02-11
> FMO13339.5prime
CAGTCGACATGCTGTTCGTATTTGGCTTTGCTAGTTCCTGGGCCGCAGAC
TACGAGCTGTTGCTGGAGGACCCTGATATCTTTTCACCCTGCACTGAACC
GCCGCCGGGATCGATTGGATTCCACGATGCCTTCGATATTGGCGATCTGG
TAGTCGACCAGGACATGGACATCATTCACCTGTCCGAGAGTGTCACCTCA
ATCTGGGATGTGGAGCCCACAGATCGCATATCCGCCAGGTTTGCAATAAT
GCATTACAACCGCGGCAGCTGGGAACCGACTGTATTTAGCATGGCCACGC
CGGACTTCTGCGCCTCAATGTTTGATGAGAATCAGTCGTGGTTTAAGTAC
TGGACCAAACACATTTCGAACCGCGATGAGGTGATGGAGAAGTGTTTTAA
AACGCGTGGTACCGTTATAATGCACAATCCATTCGATCTGCAGCTGCGTC
TAACGGACATTCGTGGTGCAACTCTCAGGGGTCGTTACAAAGCTGTGGTC
ACCTTTGAGGCGGTCGATGAGAAGGATGTGCCACGCCGTAATTCCATTTG
CTTCGAAATCAGGGGAGAGGCCGAGAAGATAAATGCAAGCTTTCTAGACC
AT
FMO13339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheB42c-RB | 1649 | CG33350-RB | 990..1566 | 8..584 | 2885 | 100 | Plus |
| CheB38c-RA | 659 | CG14405-RA | 265..360 | 258..353 | 180 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6945173..6945399 | 234..8 | 1135 | 100 | Minus |
| 2R | 25286936 | 2R | 6944941..6945117 | 410..234 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 6944697..6944870 | 584..411 | 870 | 100 | Minus |
| 2L | 23513712 | 2L | 20820449..20820544 | 353..258 | 180 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:36 has no hits.
FMO13339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:55:59 Download gff for
FMO13339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42c-RA | 3..590 | 1..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:18 Download gff for
FMO13339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42c-RB | 984..1571 | 1..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:20 Download gff for
FMO13339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheB42c-RB | 984..1571 | 1..592 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:20 Download gff for
FMO13339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6945174..6945403 | 1..233 | 98 | | Minus |
| 2R | 6944692..6944870 | 411..592 | 97 | <- | Minus |
| 2R | 6944941..6945117 | 234..410 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:18 Download gff for
FMO13339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2832679..2832908 | 1..233 | 98 | | Minus |
| arm_2R | 2832197..2832375 | 411..592 | 97 | <- | Minus |
| arm_2R | 2832446..2832622 | 234..410 | 100 | <- | Minus |
