FMO13340.5prime Sequence
1150 bp (1070 high quality bases) assembled on 2013-02-11
> FMO13340.5prime
CAGTCGACATGAAGTACTCTACCTTGCTAATTCTGGGCCTAATTTTGACC
GTGGCTCTCATGAGCGAGGCCAAGTCCAAGTCCAAAAAGCAGAAGAATAA
GCAGAATGGAATCCTGCCAATGGCCGAACCCTGCAAACCCAGCAAGTGCA
AATTACCCGATTGCCGCTGCTCCGATGCCGCTTTACCCACATCCAAGTTC
CAGGGCAAGGAGAACCAGATTCCGCAGTTCGTGACCATCACTTTCGATGA
CGCTGTAAATGCTGTCAACTTTGCCCAGTACGAGCTGCTTTTCGATGGAT
TAATCAATCCAGATGGTTGTGGAGCCGCCGGTACCTTCTTTTTGTCCCAC
GAATACACGGATTACGTGAGGGTGAATGCACTCTATAGGGCCGGTCACGA
GATAGCCCTACATTCGGTGACCCATGGAGATGGCACCGATTACTGGCGTT
CAGCTGATGTTCCGACCATCGAGCGAGAGTTTGGAGCGCAGCTCAAAATG
TTAGAGACCTTTGCCAAAGTAAATCCCAAGAAGATACAGGGAATGCGCCT
GCCGTTCCTCCAAATTTCGGGCAATAACACCTTTGAAGCAGCCCGTCGCT
TGGGCTTGACCTACGACAGTTCCTGGCCAACGCAAAAGTTCAAGGATCCG
GCCATGTGGCCGTACACCCTGGACTACAAGTCTAAGCAGGACTGTCAAAT
AGGCCCCTGTCCAGAGGCATCCATTCCCGGATTCTGGGTGAATCCCATGG
TCACGTGGACCGATACTGAGGGCTACAGTTGCTCCATGATCGATGCTTGC
GTTTACCCGCCGGAGGACGATATGGACGAGCTGTTCGACTGGATGATGGA
GAACTTCAATAGGCACTATCTTGGCAATAGAGCACCCTTCGGGATGTATC
TGCATGCTGCGTGGTTTTCGCGGGTCGCAATTACTTTGGTGCCTTTAAAA
ATTCATTAACCACCTGACACCTATTCGATGTGTATTTCACCGGAATTTCG
CGATGTTGGAGTACGTGAGAAAGCCGACGCTGGGCTCCCGGTTCAAGACT
GTCCGATTGCCCGAAGCGATGTTCAGCGTCATGGCCCGTCAAAGAGCCAC
GGCGAGAAGGCCTAATGACCGGTATGGCACAGTTCGTCGTCTATCTTGCT
FMO13340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda9-RB | 1637 | CG15918-RB | 353..1405 | 8..1054 | 5100 | 99.3 | Plus |
| Cda9-RA | 1306 | CG15918-RA | 22..1074 | 8..1054 | 5100 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17129155..17129882 | 225..951 | 3590 | 99.9 | Plus |
| 2R | 25286936 | 2R | 17128832..17129051 | 8..227 | 1100 | 100 | Plus |
| 2R | 25286936 | 2R | 17129995..17130094 | 951..1047 | 335 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:43 has no hits.
FMO13340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:00 Download gff for
FMO13340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda9-RA | 1..1068 | 9..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:23 Download gff for
FMO13340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda9-RA | 13..1090 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:23 Download gff for
FMO13340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda9-RA | 13..1090 | 1..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:23 Download gff for
FMO13340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17128823..17129051 | 1..227 | 98 | -> | Plus |
| 2R | 17129158..17129882 | 228..950 | 99 | -> | Plus |
| 2R | 17129995..17130094 | 951..1047 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:23 Download gff for
FMO13340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13016328..13016556 | 1..227 | 98 | -> | Plus |
| arm_2R | 13016663..13017387 | 228..950 | 99 | -> | Plus |
| arm_2R | 13017500..13017599 | 951..1047 | 96 | == | Plus |
