FMO13341.5prime Sequence
1131 bp (1009 high quality bases) assembled on 2013-02-11
> FMO13341.5prime
CAGTCGACATGGACGCCCCCGACGCCCCGCACACGCCCAAGTACATGGAC
GGCGGGAACACGGCGGCCAGCGTCACCCCCGGCATTAACATCCCGGGAAA
GTCCGCCTTCGTGGAGCTGCAGCAGCACGCCGCCGCCGGGTACGGCGGCA
TCCGGAGCACCTATCAGCATTTCGGACCGCAGGGCGGCCAGGATTCCGGC
TTCCCCAGTCCGCGCAGCGCCCTCGGCTACCCGTTCCCGCCAATGCACCA
GAACTCCTACTCCGGCTACCATCTGGGCAGCTACGCCCCGCCCTGCGCCA
GTCCACCGAAGGATGACTTCTCCATCTCCGATAAGTGCGAGGACTCCGGC
CTCCGCGTCAACGGCAAGGGCAAGAAGATGCGCAAGCCCCGCACCATCTA
CAGCTCGCTGCAACTGCAGCAGCTCAACCGCCGCTTCCAGCGTACCCAAT
ACCTGGCCCTGCCGGAGCGAGCGGAGCTGGCGGCGAGTCTGGGCCTCACG
CAAACGCAGGTGAAAATCTGGTTCCAGAACCGACGCTCCAAGTACAAAAA
GATGATGAAGGCGGCCCAGGGCCCGGGCACCAACAGCGGCATGCCTCTGG
GCGGGGGAGGACCCAATCCCGGCCAGCATAGCCCCAATCAAATGCACAGT
GGTGAGTTAGCGAACGGAAGATTCCTCTGGGCGGCCTTAGAAACTAATGG
AACTCTCGCTCTTGTCCATTCCACAGGCGGTATAACGGCGGTGGCTCGAA
CAGCGGCTCACCCTCACATTATCTACCTCCCGGACACAGTCCAACGCCAT
CGAGTACACCCGTGTCCGAGCTTTCCCTGAATTCCCACCACGGGCCTCAG
TCCGCCGACGCAAGCGCCGTGGGACCGAACCGCACTGGATCGACCACAAG
CCGCCGCCCCAAATGACGCACAACACCTCATCCAGCGGCAACGCTACATC
CGCAGACGCACCACCACAACCCGCCGCCCCAGATGGGTGCCTAAGTGCTC
CAGTAATGGTACCAGCCCGAGATGAATCCATCACTTATGACGGCAAGCTT
TCCAGAACATTTCGTTTGGCCGCGAGTCTCCGGAAGGGGACCATAAACTC
CATATACATAAATCTAGATCCGAAAACCTAC
FMO13341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dll-RC | 2244 | CG3629-RC | 615..1656 | 8..1042 | 4915 | 98.6 | Plus |
| Dll-RA | 3094 | CG3629-RA | 615..1259 | 8..652 | 3210 | 99.8 | Plus |
| Dll-RB | 2169 | CG3629-RB | 615..1259 | 8..652 | 3210 | 99.8 | Plus |
| Dll-RA | 3094 | CG3629-RA | 1258..1574 | 726..1035 | 1335 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24833405..24833725 | 506..825 | 1555 | 99.7 | Plus |
| 2R | 25286936 | 2R | 24819813..24820011 | 315..513 | 995 | 100 | Plus |
| 2R | 25286936 | 2R | 24817593..24817769 | 139..315 | 885 | 100 | Plus |
| 2R | 25286936 | 2R | 24833796..24834014 | 829..1042 | 760 | 94.1 | Plus |
| 2R | 25286936 | 2R | 24815436..24815569 | 8..141 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:49 has no hits.
FMO13341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:01 Download gff for
FMO13341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dll-RC | 599..1648 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:28 Download gff for
FMO13341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dll-RC | 607..1656 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:26 Download gff for
FMO13341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dll-RC | 607..1656 | 1..1042 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:26 Download gff for
FMO13341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24819814..24820007 | 316..509 | 100 | -> | Plus |
| 2R | 24833409..24833730 | 510..829 | 99 | -> | Plus |
| 2R | 24833797..24834024 | 830..1055 | 92 | -> | Plus |
| 2R | 24817594..24817769 | 140..315 | 100 | -> | Plus |
| 2R | 24815428..24815567 | 1..139 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:28 Download gff for
FMO13341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20702951..20703090 | 1..139 | 97 | -> | Plus |
| arm_2R | 20705117..20705292 | 140..315 | 100 | -> | Plus |
| arm_2R | 20707337..20707530 | 316..509 | 100 | -> | Plus |
| arm_2R | 20720932..20721253 | 510..829 | 99 | -> | Plus |
| arm_2R | 20721320..20721547 | 830..1055 | 92 | -> | Plus |
