Clone FMO13342 Report

Search the DGRC for FMO13342

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:133
Well:42
Vector:pMK33-CFH-BD
Associated Gene/TranscriptAcp63F-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13342.5prime Sequence

269 bp (269 high quality bases) assembled on 2013-02-11

> FMO13342.5prime
CAGTCGACATGAAAGCTATCATCGTTTTTATTCTGTTCATTTCAAGTGTG
CATGCTATGAGCAAATGCAACCAAGCAATTTATCTAAATCTTGATCCTCA
CTGCGGAATACTTCCCGATTGTAACTTAGATGGTCCAAATCCAAGTTACC
TCAAAAGGGTGTCGTGTGAACGCAAAGAAAACGGAAAACCAGGATTCATC
GAACTAATTCCCGGAAAATGTCTCCATGGTAAACCGCGTTGCTCGTTAAA
AGCAAGCTTTCTAGACCAT

FMO13342.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Acp63F-RB 316 CG10852-RB 10..252 9..251 1215 100 Plus
Acp63F-RA 401 CG10852-RA 10..252 9..251 1215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3816100..3816256 193..37 785 100 Minus
3L 28110227 3L 3815988..3816048 251..191 305 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:32:55 has no hits.

FMO13342.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:02 Download gff for FMO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp63F-RA 10..252 9..251 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:33 Download gff for FMO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp63F-RA 10..252 9..251 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:28 Download gff for FMO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp63F-RA 10..252 9..251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:28 Download gff for FMO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3815988..3816046 193..251 100 <- Minus
3L 3816101..3816256 37..192 100 <- Minus
3L 3816318..3816345 9..36 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:33 Download gff for FMO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3815988..3816046 193..251 100 <- Minus
arm_3L 3816101..3816256 37..192 100 <- Minus
arm_3L 3816318..3816345 9..36 100   Minus