FMO13343.5prime Sequence
1102 bp (1045 high quality bases) assembled on 2013-02-11
> FMO13343.5prime
CAGTCGACATGGCATACCACCTCGAAGCGATTTCTTCGTTTCTGTATGTG
GGCCTTGGTTGCCTGATTGCCTCCTCTGTGGCACTAAGTACAGATACTGG
AAGTGAAGGCAACGCCGGTAACGTCGGTGGCTCAACCCTAAATAATGTCA
TCAGCGAAGATCCCGAGTTCACGGATGTGATCGAAAATATTACAGTGCCT
GCGGGGCGTAATGTAAAACTGGCTTGTTCAGTCAAGAACCTGGGATCCTA
TAAGGTCGCGTGGATGCACTTCGAGCAGTCGGCCATTCTCACAGTTCACA
ACCACGTGATAACGCGTAATCCAAGGATTAGTGTCACCCACGATAAGCAT
GACAAGCACCGCACCTGGTTCCTGCATATCAACAATGTCCAGGAGGAGGA
CAGGGGCCGATACATGTGCCAAATCAATACGGTTACGGCCAAGACCCAGT
ATGGATTTGTCAAAGTAGTGGTGCCGCCGAATATAGACGACGCTCTGACC
TCCAGTGACATCATCGTGCGCGAGGGCGATAACGTTACGCTACGCTGCAA
GGCGAAAGGTAGTCCGGAGCCGACCATCAAATGGAAACGCGATGACGGCA
ACAAAATCGTTATTAACAAGACGCTCGAGGTGCACGACTTGGAGACGGAT
TCCCTGGAGCTGGAGCGGATTTCGCGACTGCACATGGGCGCCTACCTGTG
CATCGCATCGAATGGTGTGCCGCCCAGTGTGTCCAAGCGGATCAAAGTCA
GCGTGGACTTTTCGCCCATGGTCTGGATACCGCATCAGCTGGTGGGTATT
CCCATTGGATTCACATCACCCTGGAATGCTTCATCGAGGCGAATCCGACC
TCACTTAACTATTGGACGCGCGAAAACGATCAAATGATCACTGAGTCATC
AAAGTACAAACCCGAAACCATTCCCGGTCATCCGTCGTACAGGCGACCAT
GCGGCTCCACGATTACCACGTTCAGAGCAGCGATTATGGCACTACAAGTG
CGTCGCCAAAATCCTCGGGGGCGACATGGAACGGCAACATAAAGCTTGTA
CCTGTTCGAGTCCGCCCGAACAACACAACCGGCCGCCCACAACCACAACG
CC
FMO13343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42368-RA | 3150 | CG42368-RA | 678..1767 | 9..1101 | 5105 | 98.5 | Plus |
| CG31708-RC | 3384 | CG31708-RC | 904..1617 | 155..867 | 920 | 75.7 | Plus |
| CG31708-RB | 3562 | CG31708-RB | 1022..1735 | 155..867 | 920 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6391128..6391346 | 471..253 | 1095 | 100 | Minus |
| 2L | 23513712 | 2L | 6386089..6386248 | 630..471 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 6385684..6385834 | 909..760 | 705 | 99.3 | Minus |
| 2L | 23513712 | 2L | 6408245..6408383 | 147..9 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 6385903..6386032 | 759..630 | 635 | 99.2 | Minus |
| 2L | 23513712 | 2L | 6394835..6394944 | 256..147 | 550 | 100 | Minus |
| 2L | 23513712 | 2L | 9060727..9060928 | 454..253 | 530 | 84.2 | Minus |
| 2L | 23513712 | 2L | 6380653..6380788 | 1046..912 | 350 | 92 | Minus |
| 2L | 23513712 | 2L | 9059471..9059561 | 759..669 | 275 | 86.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:33:01 has no hits.
FMO13343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:03 Download gff for
FMO13343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42368-RA | 651..1747 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:36 Download gff for
FMO13343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42368-RA | 671..1767 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:32 Download gff for
FMO13343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42368-RA | 671..1767 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:32 Download gff for
FMO13343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6380648..6380790 | 910..1052 | 92 | <- | Minus |
| 2L | 6385684..6385834 | 760..909 | 99 | <- | Minus |
| 2L | 6385903..6386031 | 631..759 | 99 | <- | Minus |
| 2L | 6386089..6386247 | 472..630 | 100 | <- | Minus |
| 2L | 6391128..6391344 | 255..471 | 100 | <- | Minus |
| 2L | 6394837..6394943 | 148..254 | 100 | <- | Minus |
| 2L | 6408245..6408390 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:36 Download gff for
FMO13343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6408245..6408390 | 1..147 | 97 | | Minus |
| arm_2L | 6380648..6380790 | 910..1052 | 92 | <- | Minus |
| arm_2L | 6385684..6385834 | 760..909 | 99 | <- | Minus |
| arm_2L | 6385903..6386031 | 631..759 | 99 | <- | Minus |
| arm_2L | 6386089..6386247 | 472..630 | 100 | <- | Minus |
| arm_2L | 6391128..6391344 | 255..471 | 100 | <- | Minus |
| arm_2L | 6394837..6394943 | 148..254 | 100 | <- | Minus |
