FMO13349.5prime Sequence
1144 bp (1052 high quality bases) assembled on 2013-02-11
> FMO13349.5prime
CAGTCGACATGCTGAAGCAAAACAATGGTCTGCATCTGGCTAGGCGCAAT
CTCTGGGTGGTTTGCAGTGGCCTCCGTGCCAAGGATTGCGACAGTGGCGG
TAAGGGCGGCAAGGGCAAGGAGAATGGCAAGTTTCGTACGGAGAAGGACA
CCTTCGGGGAGCTAAAGGTGCCGGCGGACAAGCTGTACGGCGCACAGACG
ATGCGCTCCAAATTGAATTTTCCCATTGGCGACATAGGCGAACGTATGCC
GATGCCGGTGATCCAGGCCATGGGCATACTGAAGAAGGCATGTGCCGAGG
TCAACAAGGATTACGGACTAGATGGCAAGGTGTCGGATGCCGTATCCTGC
GCCTGCGACGATGTCATTTCCGGCAAGCTATACAAACAGGGTCACTTCCC
ATTGGTCATCTGGCAAACCGGTTCGGGCACCCAGACCAATATGAACACCA
ACGAGGTGATCAGCAATGCGGCCATTAAGATGATGGGCGGCGAACTGGGC
AGCAAGAAGCCGGTGCATCCCAACGATCATGTGAACAAGTCGCAGAGCTC
CAACGACACCTTCCCCACGGCCATTCACATTTCGGTGGGCATGGAGCTGA
ACGAGCGGCTTGTTCCGGCGGTTACACACTTGAGGGATGCCCTCAAGTCC
AAGTCGGATGAGTTCAAGGACATCATCAAGATCGGACGCACCCACTTGAT
GGACGCAGTTCCGCTGACTTTGGGCCAGGAATTCAGCGGTTATACACAGC
AGTTGACCAACGGTCTGGAAAGGATCAAGGGCTGTCTGCCGCGCGTCTAT
GAGCTGGCTCTGGGCGGCACTGCTGTGGGTACGGGTCTGAACACACGCAA
GGGATTCGCCGAGAAGTGGCCAAGCGCATTTCGGAGCTAACCTGCTTGCC
CTTCGTGTCGGCGCCCACAAGTTCGAGGCACTGGCTGCCGCGATGCCATG
GTGAGTGCATGGTGTGCTCAACACGATCGCCGTCAGCCTGATGAGATCCG
CCACGATTATCCGATTGCTGGATCGGGTCCGCCGTTTGCGTCTGGGCGAA
CTATGCTTGCCGGAAAACGAGCCCGTAGCTCCATCATGCCGCAGGTGATT
CCACGGCAATGGAATCATGACATGGCTCTGGTGTCACAGTGATG
FMO13349.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4095-RA | 1647 | CG4095-RA | 70..1188 | 9..1117 | 5055 | 97.9 | Plus |
| l(1)G0255-RB | 1668 | CG4094-RB | 132..1095 | 130..1090 | 1645 | 80 | Plus |
| l(1)G0255-RA | 1740 | CG4094-RA | 204..1167 | 130..1090 | 1645 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6682497..6683146 | 447..1090 | 2605 | 95.9 | Plus |
| X | 23542271 | X | 6680566..6681111 | 454..994 | 1165 | 82.6 | Plus |
| X | 23542271 | X | 6682218..6682424 | 251..457 | 1035 | 100 | Plus |
| X | 23542271 | X | 6681970..6682134 | 87..251 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 11464425..11464987 | 917..356 | 785 | 76.4 | Minus |
| X | 23542271 | X | 6681836..6681913 | 9..86 | 390 | 100 | Plus |
| X | 23542271 | X | 6680304..6680488 | 258..445 | 230 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:33:38 has no hits.
FMO13349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:10 Download gff for
FMO13349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4095-RA | 82..1188 | 9..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:01 Download gff for
FMO13349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4095-RA | 70..1176 | 9..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:53 Download gff for
FMO13349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4095-RA | 70..1176 | 9..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:53 Download gff for
FMO13349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6681836..6681913 | 9..86 | 100 | -> | Plus |
| X | 6681970..6682134 | 87..251 | 100 | -> | Plus |
| X | 6682219..6682422 | 252..455 | 100 | -> | Plus |
| X | 6682506..6683165 | 456..1105 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:01 Download gff for
FMO13349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6576252..6576455 | 252..455 | 100 | -> | Plus |
| arm_X | 6575869..6575946 | 9..86 | 100 | -> | Plus |
| arm_X | 6576003..6576167 | 87..251 | 100 | -> | Plus |
| arm_X | 6576539..6577198 | 456..1105 | 96 | | Plus |
