Clone FMO13351 Report

Search the DGRC for FMO13351

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:133
Well:51
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13510-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13351.5prime Sequence

413 bp (413 high quality bases) assembled on 2013-02-11

> FMO13351.5prime
CAGTCGACATGGACAGCAAGCAGCCTCCACCGTACAGTGAACAGTCCGGA
TACACTCCCGCACAAACCTATCAGCCCGGTGGCCCCACCCAGCCACCACT
GTACCCACCGATGCCGCAGCCACCGCAGTCCTCAACGGTGATCATCCAGA
CCACCACAACCTCCAACCTGGTGCCCATCGGCAGTGGACCCACCCGCATC
CGCTGTCCCTCCTGTCACGCCGAAGTACTGACCACCGTGAAGTCCACTCC
TTCCGGCAGGACGCACTGCTGGGCCCTCATCCTGTGCCTGTTCATCTGCT
GGCCGTGCGTATGCCTACCTTACTGCATGGACTCCTGCCAGAATGCCAAC
CACTACTGCCCCAACTGCAGCGCCTACATCGGCACCTACGAGAACGCAAG
CTTTCTAGACCAT

FMO13351.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42565-RB 2577 CG42565-RB 89..475 9..395 1935 100 Plus
CG13511-RB 2577 CG13511-RB 89..475 9..395 1935 100 Plus
CG13510-RC 2577 CG13510-RC 89..475 9..395 1935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22657989..22658275 9..295 1435 100 Plus
2R 25286936 2R 22658923..22659022 296..395 500 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:33:50 has no hits.

FMO13351.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:12 Download gff for FMO13351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13510-RA 85..481 9..407 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:11 Download gff for FMO13351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13510-RA 89..485 9..407 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:02 Download gff for FMO13351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13510-RC 89..485 9..407 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:02 Download gff for FMO13351.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22657989..22658275 9..295 100 -> Plus
2R 22658923..22659032 296..407 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:11 Download gff for FMO13351.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18545494..18545780 9..295 100 -> Plus
arm_2R 18546428..18546537 296..407 95   Plus