FMO13352.5prime Sequence
1073 bp (1032 high quality bases) assembled on 2013-02-11
> FMO13352.5prime
CAGTCGACATGACGGCCGAGACAAACAAAGGACCCGTTCTGGGAATGAGG
CATGTCCAGGCGCTACTGATCTTCCTCAATATAACTACCGTATTCATAGG
CCGCCTAAATGTGGGCGTGTCTGTGGTGGCAATGACCAATGCGGAAACCA
CGAACCCGAACTTTCCGGAATACGATTGGACGGAGGCAGAGAAGTCGTAT
ATATTCTCCAGTTTCTTTTGGGGCTACATCTTGACCCAATTTATAGGTGG
CTATCTCTGCAAGCGCTTTGGAGTCAAGAGTGTAATGTTTTGGGGTGTCT
TTGTATCTGGTGTCTGCAGTGCATTGACCCCGCTCTTCATCGGTTTTGGC
GGATGGCAGGCCTACTGCGGAATTCGCGTGGTTATGGGCTTGGCACAGGG
ACTAGTTTTTCCCTGTATTCATCACCATTTGGCCAAATGGTCACCTCCGG
CGGAACGAAATCGGTTGGGAGCTCTTAGTCACACTGGGATGGAGTGCGGC
AATGTAAGTGCCATGTTCTTGAGCGGAATGATAGCCAAAAGTGCCATTGG
TTGGCCAGGAATATCATATGTCTCCGCAGGATTAGCCTTCGCCTGGTGTG
CCATTTGGTTCGTTTTTGCCGCTGACAATGCAGTGGAATCTCGTTACATA
ACCCAGGAAGAACTCCACTATATCGAATCGTCTCTGAAGCACAATGAGGA
CTATCACAAGACCGTAATTCCCGTACCATGGATGGCGATTTGGACCTCGG
CACCATTTCTTGCTCTTACGCTGACGCGTTGTTGCGCGACCTGGGGTCTG
AGCACCCTCCAGGCCCAAATCCCAACTTATATGAACGGAGTTCTGGATAT
GGACATGAAAAGCAATGCATTCTTTTCGGCATTACCATTTTCTGGCCATG
TGGATTATGTCGTATGTGTACCTGAATATCGCGATGTTCTGCTCGCCGGA
AAAAGCTGAGTTTAACGGCCCTCCGGAGACCTTCAACCTCGTTGGCCTTC
TGATTCCTTGTGCCCACTTTGAATTGAAATCGGATTCCTGGATCAGGGAG
CAAAAAAACCTGGCCAAATGGCC
FMO13352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12490-RB | 1647 | CG12490-RB | 54..1108 | 9..1064 | 4985 | 98.6 | Plus |
| CG30265-RB | 1622 | CG30265-RB | 58..1114 | 9..1066 | 2655 | 84 | Plus |
| CG30265-RA | 1771 | CG30265-RA | 207..1263 | 9..1066 | 2655 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22835185..22836081 | 167..1064 | 3970 | 98.3 | Plus |
| 2R | 25286936 | 2R | 22833119..22833999 | 167..1047 | 2375 | 86.7 | Plus |
| 2R | 25286936 | 2R | 22837915..22838670 | 167..923 | 1620 | 81.2 | Plus |
| 2R | 25286936 | 2R | 22834990..22835129 | 29..168 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 22837720..22837859 | 29..168 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:33:56 has no hits.
FMO13352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:13 Download gff for
FMO13352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12490-RB | 54..1113 | 9..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:14 Download gff for
FMO13352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12490-RB | 54..1113 | 9..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:05 Download gff for
FMO13352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12490-RB | 54..1113 | 9..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:05 Download gff for
FMO13352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22834700..22834721 | 9..30 | 100 | -> | Plus |
| 2R | 22834992..22835128 | 31..167 | 100 | -> | Plus |
| 2R | 22835186..22836079 | 168..1062 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:14 Download gff for
FMO13352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18722223..18722244 | 9..30 | 100 | -> | Plus |
| arm_2R | 18722515..18722651 | 31..167 | 100 | -> | Plus |
| arm_2R | 18722709..18723602 | 168..1062 | 98 | -> | Plus |
