FMO13358.5prime Sequence
413 bp (413 high quality bases) assembled on 2013-02-11
> FMO13358.5prime
CAGTCGACATGACGACTGCCTTTGATGCCGCACACACTGAGGGGCCGGGA
TTCGTGGGCATTCGGTTCTGCCAGGAGTGCAACAACATGCTGTACCCCAA
GGAGGACAAGGAGAACAAGATCCTGCTGTACGCCTGCCGGAATTGCGATT
ACAAACAGGAGGCGGACTCCAACTGCATCTACGTGAACAAGATTATGCAC
GAGATCGACGAGCTGACCCACATTGTGCCCGACGTGATTTCCGATCCCAC
GCTGCCGCGCACCGAAGACCACGCTTGTCCCAAGTGCTCCCATCGGGAGG
CGGTCTTCTTCCAGGCGCAAACTCGTCGCGCCGAAGAGGAGATGCGACTG
TACTACGTGTGCACCAACCAGAACTGCACCCACCGTTGGACGGAGGCAAG
CTTTCTAGACCAT
FMO13358.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII15-RC | 1035 | CG3284-RC | 43..430 | 8..395 | 1940 | 100 | Plus |
| RpII15-RB | 694 | CG3284-RB | 36..423 | 8..395 | 1940 | 100 | Plus |
| RpII15-RA | 701 | CG3284-RA | 43..430 | 8..395 | 1940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14309186..14309573 | 8..395 | 1940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:33:19 has no hits.
FMO13358.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:06 Download gff for
FMO13358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII15-RA | 31..425 | 1..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:46 Download gff for
FMO13358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII15-RA | 50..444 | 1..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:41 Download gff for
FMO13358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII15-RA | 36..430 | 1..395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:41 Download gff for
FMO13358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14309179..14309573 | 1..395 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:46 Download gff for
FMO13358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10134901..10135295 | 1..395 | 99 | | Plus |
