FMO13360.5prime Sequence
975 bp (975 high quality bases) assembled on 2013-02-11
> FMO13360.5prime
CAGTCGACATGGACCGAAAATGGCAGCTCCTGGGACTGGGTTTCGTCCTG
GGAGTGACTGCGCTCTGTGCATCCTTCGTGGGTGGAATGTATTTTCAGCA
CACAGATGCCAGAAAACGCCTGCGGGAACTAATACAAACGGATCCCTATG
CCTACTATCTCAGTCCCAAAATTTATGAAGTGTTTACTTTCTTTGAGAGC
AATAATGAAGACGATCACCGGATGAGGCAGATCATGAAGTTTGGGTTCCC
TGGCCTGGATGACTTGCGTCTGTATAGTGACTTCGTACTATCCTACGATC
GCCGAAACCGAGTGGCCCACTGGGTGTGCGAGCACCTCCAGGCGGACAGC
ATACATCCGAATCGAGGCAGACGTGGTCGCAACCCATACCAGCCGGATTT
GAGTGTTCCCTCCAACTTCCGATCGGAACTGAGCGACTATCGGAGATCTG
GATTCGACCGAGGACACTTGGCAGCCGCAGGAAATCACCATCTGCAACAG
AATCACTGCGAGGATACGTTTTTCCTAACGAATATTGCCCCACAAGTGGG
CCAGGGCTTCAACCGAAGCGCGTGGAACAACTTGGAACAATATGTTCGAA
ATCTGGTCCACCGATTTGGATCCGTTTTCGTGTGTACTGGTCCACTATAT
AAGCCCAATCAAAGACCGGGAGGTAAGTGGGCCGTGGAGTACGAGATGAT
CGGACTGAATATGGTTGCAGTTCCGACGCACTTCTTCAAGGTGATCATGG
TGGAATCAAAACTGCACCTGGGTAAACCCTATATGGAGGGCTATGTCCTG
CCCAATGCTCCAATACCAGATGGTCTGCCACTACGATCGTTTCTCTGCGA
CATCCGGGAGATTGAGCACTACGCAGTCTCAAGTTCTTCGATGGTTTGAG
AAGAGTGCCCTATTCGGCAGCAATTATCCAAGTGAATCTCGAGTTTTCGC
GAATTCAGTGCAGCTTTCTAGACAT
FMO13360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tengl2-RA | 1018 | CG32463-RA | 19..973 | 8..959 | 4700 | 99.7 | Plus |
| EndoG-RA | 1124 | CG8862-RA | 543..643 | 465..565 | 250 | 83.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2238349..2239129 | 959..182 | 3755 | 99.6 | Minus |
| 2L | 23513712 | 2L | 2239192..2239366 | 182..8 | 875 | 100 | Minus |
| 2R | 25286936 | 2R | 12177911..12178011 | 565..465 | 250 | 83.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:33:31 has no hits.
FMO13360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:09 Download gff for
FMO13360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32463-RA | 14..976 | 1..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:57 Download gff for
FMO13360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tengl2-RA | 14..976 | 1..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:50 Download gff for
FMO13360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tengl2-RA | 14..976 | 1..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:50 Download gff for
FMO13360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2238346..2239128 | 183..963 | 99 | <- | Minus |
| 2L | 2239192..2239371 | 1..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:57 Download gff for
FMO13360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2238346..2239128 | 183..963 | 99 | <- | Minus |
| arm_2L | 2239192..2239371 | 1..182 | 97 | | Minus |
