FMO13362.5prime Sequence
392 bp (392 high quality bases) assembled on 2013-02-11
> FMO13362.5prime
CAATCGACATGCTCACCAGACAACCCGACTACACCATCTCCGAGCTGGGC
CATCCCATCCATCAGTGGTCGGATTCGACCGCGTGCGAGTCCCTCAAGAA
GCTGGACTACACAAAGATGCCCAGTTCTCCGCCATCACCACATCGCCTGC
TGCCACTGAGGGAAACGTTGGACGATTGTTTCAAGCGCTTGACGATGAGG
AGCATAGAAGATTTCGAAGAGGATCCCGTATACCAGCAGAAATTGAGAAA
GAATCAGTGCAATGAACAGCAGCGAAGGCGCAATCAAAAATGTCAAGATA
AAGCCCAGTCCGGAACAACAACGACGACGACGACGACGACAACGATAGCG
GCGAGCTGCGATTTAAACAATTTCGCAAGCTTTCTAGACCAT
FMO13362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31710-RC | 795 | CG31710-RC | 309..674 | 9..374 | 1785 | 99.2 | Plus |
| CG31710-RA | 728 | CG31710-RA | 242..607 | 9..374 | 1785 | 99.2 | Plus |
| CG31710-RD | 1253 | CG31710-RD | 242..610 | 9..374 | 1745 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9703268..9703539 | 280..9 | 1345 | 99.6 | Minus |
| 2L | 23513712 | 2L | 9703085..9703179 | 374..280 | 445 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:34:49 has no hits.
FMO13362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:23 Download gff for
FMO13362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31710-RA | 228..604 | 1..382 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:49 Download gff for
FMO13362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31710-RA | 238..614 | 1..382 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:34 Download gff for
FMO13362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31710-RA | 238..614 | 1..382 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:34 Download gff for
FMO13362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9703078..9703178 | 281..382 | 94 | <- | Minus |
| 2L | 9703268..9703543 | 1..280 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:49 Download gff for
FMO13362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9703078..9703178 | 281..382 | 94 | <- | Minus |
| arm_2L | 9703268..9703543 | 1..280 | 98 | | Minus |
