FMO13363.5prime Sequence
665 bp (665 high quality bases) assembled on 2013-02-11
> FMO13363.5prime
CAATCCACATGCATCGCGAAAACGCCTACGGCAAGGAGGCCGAGCTGAAA
AATCTGGCCAAACGCGAGTTGGCCAACGGGTTGGACAAGGATCCAATTTA
CAAATTGCGCCTGCAGTGCTTCAGTCGCGGTGCCACCGGCATCTTGGGCC
TGTCCAGATCATTCCGGGTGATGGACGACGATGGGAGCAAATCTCTCAGT
CCCGAGGAGTTCAAAAAAGGAGTCACGGATATCGGCCTGGACCTGACTGA
TTCCGAAATCGATGAAATGTTCTCCAGATTCGACACAGATGGAAGTGGCA
ATATTAATATGACAAAATTCCTAGTAAAGCTGCGTCCTCCTATGAATAAT
TCGCGTATCAGTATCATCGAAAAGGCCTTCGATAAGATGGATGCCAATGG
CGATGGCCAAATTACTGTCACCGATTTGAACAATGTATATTCGGTGCGCG
ATCATCCGAAATACTTAAGTGGCGAGATGACGGAAAACCAAATATTCACG
CAATTCCTGAAAAACTTCGAGGTGGGTGCTCCAAATCCGGATGGCATCGT
AACCAGGGAGGAATTTATCAACTACTATGCCACGATCAGCGCCTCGATCG
ATAACGACGCTTATTTTGATCTTATGATGAGACAAGCCTACAAACTCGCA
AGCTTTCTAGACCAT
FMO13363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31345-RA | 984 | CG31345-RA | 143..781 | 9..647 | 3090 | 98.9 | Plus |
| CG10126-RB | 835 | CG10126-RB | 146..276 | 83..213 | 190 | 76.3 | Plus |
| CG10126-RA | 907 | CG10126-RA | 218..348 | 83..213 | 190 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12811348..12811659 | 647..336 | 1515 | 99 | Minus |
| 3R | 32079331 | 3R | 12813773..12813921 | 157..9 | 715 | 98.7 | Minus |
| 3R | 32079331 | 3R | 12811950..12812074 | 277..153 | 610 | 99.2 | Minus |
| 3R | 32079331 | 3R | 12811720..12811781 | 335..274 | 295 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:34:55 has no hits.
FMO13363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:24 Download gff for
FMO13363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31345-RA | 139..787 | 2..655 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:53 Download gff for
FMO13363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31345-RA | 139..787 | 2..655 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:37 Download gff for
FMO13363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31345-RA | 139..787 | 2..655 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:37 Download gff for
FMO13363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12811342..12811659 | 336..655 | 97 | <- | Minus |
| 3R | 12811720..12811777 | 278..335 | 98 | <- | Minus |
| 3R | 12811950..12812069 | 158..277 | 99 | <- | Minus |
| 3R | 12813773..12813924 | 6..157 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:53 Download gff for
FMO13363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8637064..8637381 | 336..655 | 97 | <- | Minus |
| arm_3R | 8637442..8637499 | 278..335 | 98 | <- | Minus |
| arm_3R | 8637672..8637791 | 158..277 | 99 | <- | Minus |
| arm_3R | 8639495..8639646 | 6..157 | 98 | | Minus |
