Clone FMO13366 Report

Search the DGRC for FMO13366

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:133
Well:66
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34293-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13366.5prime Sequence

278 bp (278 high quality bases) assembled on 2013-02-11

> FMO13366.5prime
CAGTCGACATGTTAAATTTAAAACACTTTGCCAGCCACGCCTACCGCCAG
TACGAACTGGTGACGTGCGTGAACATGCTGGAGCCCTGGGAAAAGAAGCT
GATCAATGGATTCTTTCTGGTGATGCTGCTCCTGGTGCTCTTCTCCAGCT
TCATGTATCTTCCCAACTACATGCAAACCCTAATGCAATTTGTAACGCCG
CCCAACTGGCACAATTCCCCGGATAGCGCAGCCTATGTGGCACAAAAGAT
CGCACGGAGCGCAAGCTTTCTAGACCAT

FMO13366.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG34293-RB 740 CG34293-RB 48..299 9..260 1260 100 Plus
CG34293-RA 446 CG34293-RA 48..299 9..260 1260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27165216..27165370 260..106 775 100 Minus
3R 32079331 3R 27165432..27165528 105..9 485 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:35:12 has no hits.

FMO13366.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:28 Download gff for FMO13366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34293-RA 40..309 1..272 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:06 Download gff for FMO13366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34293-RA 40..309 1..272 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:48 Download gff for FMO13366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34293-RA 40..309 1..272 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:48 Download gff for FMO13366.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27165206..27165370 106..272 97 <- Minus
3R 27165432..27165536 1..105 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:06 Download gff for FMO13366.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22990928..22991092 106..272 97 <- Minus
arm_3R 22991154..22991258 1..105 96   Minus