FMO13367.5prime Sequence
1131 bp (1028 high quality bases) assembled on 2013-02-11
> FMO13367.5prime
CAGTCGACATGCATCGCAGCATGGATCGCAGAAGGAGCAGAACCCCGAGG
ACTCTGCCAGTCTGCTGGATTCTGCTGTGCCTGGTGGCCTGGACTGTTGC
AGATGACTGGTCTCTAAGTTGCGCCTCCAACTGCACCTGCAAGTGGACCA
ATGGCAAGAAGTCGGCCATCTGCAGCTCCCTGCAGCTGACCACCATTCCG
AACACCCTGAGCACAGAGCTGCAGGTGCTGGTGCTCAATGACAACCACAT
CCCGTACCTCAACCGGGAGGAGTTCTCCACTCTGGGCCTGTTGAACTTGC
AGCGAATTTACCTCAAGAAGTCCGAGGTGCAGTACATACACAAGGAGTCG
TTCCGCAATCTGAAGATACTGGTGGAGATCGACCTGTCGGACAATAAGCT
GGAGATGCTCGACAAGGACACCTTCATGGGGAACGATCGCCTGAGGATAC
TCTATTTGAATGGAAATCCCCTCAAGCGCCTAGCGGCTTATCAGTTTCCT
ATTCTGCCCCATCTGCGCACCTTGGACATGCACGACTGCCTCATCTCCTA
CATTGATCCCATGTCCCTGGCCAATCTTAATCTGCTGGAGTTCCTCAACC
TAAAGAACAACCTGCTGGAGAGCCTGAGCGAGTACGTGTTCCAGCACATG
GCCAATCTGAAGACGCTCTCCCTGGAGGAGAATCTCTGGCAGTGCAACTG
CAAACTGCGAAAGTTCCGGGGCTGGTATGTGAACAGCCGCCTGAGCTCCG
TGAGTCTGGTATGCAAGGGCCCTCCGGCCCAGAAGGATCGCACATGGGAT
AGCGTGCACGACGAGCTCTTCGGCTGTCCGCCGCGCGTTGAGATCTTCAC
AATGAAGAGGTGCAGAACATCGACATCGGAAGTAATACCACCTTTAGCTG
CCTGGTGTACGGGGATCCCCTGCCGGAGTGGCTTGGGAACTGAATGGAAA
GATACTGGACACGACACGTGCTCTCGATCGGAGAGCATCGCCTCGGATAG
CTGTGGAGTATCTAACCGGTTTCACGTGACCAGCTGATGCCTGAAACTTA
CGCCTTGCAACGGGCTTAAATCATCGCAGATGACGCGAAACTACTAGATC
TACCTCAGCGAATTGCGTCGGCAAGGTGCTG
FMO13367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kek6-RB | 6616 | CG1804-RB | 1069..2183 | 9..1111 | 4955 | 97.3 | Plus |
| kek6-RA | 6616 | CG1804-RA | 1069..2183 | 9..1111 | 4955 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31659149..31660134 | 59..1035 | 4440 | 98.6 | Plus |
| 3R | 32079331 | 3R | 31658918..31658969 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:18 has no hits.
FMO13367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:29 Download gff for
FMO13367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kek6-RA | 1..1036 | 9..1035 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:10 Download gff for
FMO13367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kek6-RA | 1062..2104 | 1..1035 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:51 Download gff for
FMO13367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kek6-RA | 1062..2104 | 1..1035 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:51 Download gff for
FMO13367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31658911..31658969 | 1..60 | 93 | -> | Plus |
| 3R | 31659151..31660134 | 61..1035 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:10 Download gff for
FMO13367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27484633..27484691 | 1..60 | 93 | -> | Plus |
| arm_3R | 27484873..27485856 | 61..1035 | 98 | == | Plus |
