FMO13368.5prime Sequence
1015 bp (1015 high quality bases) assembled on 2013-02-11
> FMO13368.5prime
CAGTCGACATGGCCAGCCAAAGGATACGGAGCCGGCCAGAAGAAGGACGA
AAAGGACGAAGAATGAGCAGCGCCTGCCGACCGGGAGCCTTGCATACGGC
ATTCAATATGCTGGCGTTGAGCTGGATTATAATCTCAGAGTTATTGCTCA
GTGCTCACTGCCTGAAGGACCTGAAGATATTTGTACCAGAGGCCGTATTA
ATGGGAAATGCAGCGACATTGTCTTGTCAATACGATTTGGAGCAGGCGGC
GCTTTACGCGGTACGCTGGTACTTCGGACAGGAGGAGTTCTACCGCTACG
TTCCACGCGAGGCCAAGCCCACATTTGTCTTCGCCGTTGCCGGCATTAAT
GTTGATCTCGCCAACTCGGATGCCACGTCGGTGACGTTGAAGGGTGTCAC
CCGGGAGCTGAGCGGCAGCTATCAGTGCGAGGTCTCCGAGGACGCACCGC
TCTTCCACACCGAGATTCGATCGGCCCACATGCAGGTGATTGAGCTGCCC
AAAGACGATCCGGTGATGCAGGTGGACAAGAAGGTGATTGGCGTGAACGA
CAACTTCAAGGCTGTGTGCACGGTGGGCCCTTCGTATCCGCCGGCCAACA
TCACCTGGAGCATCAACGGAAACCAGATCCGCAGGACGCCGCTGCAGCGC
ATCTCGCAGGACACCTACGAGGGCTCCACTACGTACTCCTCGCTGGATAT
CTACCCCAACAGCCAGGCGCTGCAGGGCTTCTTCGAGACGAAGTATCAGC
ACAGCGTGAACCTGCAGTGCGTGGTGACCATCCGGCACATGTACCACAAA
GTCGTGGCGCAGCGGATCGGGCTGAATGCTGCGCCGCCGACGACCATATC
GCCGATCTGCTGGGACTCGAGGGATCCAAGCGGTATGCCAACGGAGATCC
GGACACTCGGCGCTGACAGGCGCTCGCAGCGCTGCTGCATTTGCTGTGAG
CCTTTGGCGCTGTTTCGCTGCGATTTCCCCCTGGCCATGCGCCATCTGGC
AGCTTTCTAGACCAT
FMO13368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-VI-RB | 3540 | CG14064-RB | 752..1741 | 6..989 | 4770 | 99.2 | Plus |
| beat-VI-RA | 1915 | CG14064-RA | 752..1741 | 6..989 | 4770 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28472644..28472994 | 624..970 | 1555 | 98.9 | Plus |
| 3R | 32079331 | 3R | 28472155..28472424 | 357..626 | 1350 | 100 | Plus |
| 3R | 32079331 | 3R | 28462052..28462199 | 6..153 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 28464075..28464189 | 242..356 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 28463714..28463807 | 153..246 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:24 has no hits.
FMO13368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:30 Download gff for
FMO13368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VI-RA | 750..1747 | 1..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:15 Download gff for
FMO13368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VI-RA | 746..1743 | 1..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:54 Download gff for
FMO13368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VI-RA | 746..1743 | 1..992 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:54 Download gff for
FMO13368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28462046..28462199 | 1..153 | 98 | -> | Plus |
| 3R | 28463715..28463806 | 154..245 | 100 | -> | Plus |
| 3R | 28464079..28464189 | 246..356 | 100 | -> | Plus |
| 3R | 28472155..28472424 | 357..626 | 100 | -> | Plus |
| 3R | 28472647..28473017 | 627..992 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:15 Download gff for
FMO13368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24287768..24287921 | 1..153 | 98 | -> | Plus |
| arm_3R | 24289437..24289528 | 154..245 | 100 | -> | Plus |
| arm_3R | 24289801..24289911 | 246..356 | 100 | -> | Plus |
| arm_3R | 24297877..24298146 | 357..626 | 100 | -> | Plus |
| arm_3R | 24298369..24298739 | 627..992 | 97 | | Plus |
