Clone FMO13371 Report

Search the DGRC for FMO13371

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:133
Well:71
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12158-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13371.5prime Sequence

209 bp (209 high quality bases) assembled on 2013-02-11

> FMO13371.5prime
CAGTCGACATGAAGCAGTTCGCATTGTTCAGCATCTTCCTTCTAATTCTG
GCTGTGGGTTTGGCACAAATGCCGCTGCAGGTGGCCGCCCAGGGCCAAAA
TGGACATTCGCAGGGACAGCCGCCAAGACCGCCAAATGGCAATGGAAACG
GCAACCAGCAGAGTGGACAAGGACAAAGCGGGCAGAACAACGCAAGCTTT
CTAGACCAT

FMO13371.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12158-RA 279 CG12158-RA 16..200 7..191 925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9362653..9362782 191..62 650 100 Minus
2R 25286936 2R 9362835..9362891 63..7 285 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:34:33 has no hits.

FMO13371.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:20 Download gff for FMO13371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12158-RA 10..200 1..191 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:39 Download gff for FMO13371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12158-RA 10..200 1..191 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:26 Download gff for FMO13371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12158-RA 10..200 1..191 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:26 Download gff for FMO13371.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9362653..9362781 63..191 100 <- Minus
2R 9362836..9362896 1..62 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:39 Download gff for FMO13371.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5250158..5250286 63..191 100 <- Minus
arm_2R 5250341..5250401 1..62 95   Minus