Clone FMO13373 Report

Search the DGRC for FMO13373

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:133
Well:73
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSrp14-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13373.5prime Sequence

353 bp (353 high quality bases) assembled on 2013-02-11

> FMO13373.5prime
CAGTCGACATGGTTTTGCTAGACAATTCGAACTTTATCCTGCGCCTGGAG
AAGATCGCAAATGCGGCCAAGAAGGACTCCTCCTTCACGCTGACGTTCAA
GCGATATGATGGCAACGATAAGCCCGTGCCGAGGGAAGGACGGCCACCGC
TGCCCAAGCCGGAGACCTACATGTGCCTGATGCGCGCCCAGTCCAAGTCC
CAAAAAATTTCCACCGTTGTCCGGCAGGAGGATGTGCCCGCCATGATGAG
CATGTACTCGCAGTTCATGAAGAGCAAGATGGACGGGCTAAAGCGGGTTA
AGAAAGTCAAAAGCAAGGCCAAGGCGACAAAGGGTGCAAGCTTTCTAGAC
CAT

FMO13373.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Srp14-RB 464 CG5417-RB 51..381 5..335 1640 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20580553..20580681 207..335 645 100 Plus
3R 32079331 3R 20580390..20580490 106..206 505 100 Plus
3R 32079331 3R 20580249..20580325 33..109 370 98.7 Plus
Blast to na_te.dros performed on 2014-11-28 18:35:48 has no hits.

FMO13373.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:35 Download gff for FMO13373.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp14-RB 40..375 1..339 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:31 Download gff for FMO13373.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp14-RB 49..384 1..339 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:08 Download gff for FMO13373.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp14-RB 49..384 1..339 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:08 Download gff for FMO13373.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20580249..20580321 33..105 100 -> Plus
3R 20580390..20580490 106..206 100 -> Plus
3R 20580553..20580684 207..339 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:31 Download gff for FMO13373.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16405971..16406043 33..105 100 -> Plus
arm_3R 16406112..16406212 106..206 100 -> Plus
arm_3R 16406275..16406406 207..339 98   Plus