FMO13374.5prime Sequence
665 bp (665 high quality bases) assembled on 2013-02-11
> FMO13374.5prime
CAGTCGACATGAGCGCCAAAACAATGAAAATCTCAAAAATAGCCAAATAC
ATCAAGAAAAGGGTGCTGTCAATGAGCACAGATGAATATCGCAAGACCTC
GCTCTTTGCCACCGGTTCCTTCGACCTGGACTTCCCCATACCAGACCTGA
TCGGCAAGACAGAAATCCTTACAGAGGAGCATCGCGAGAAGCTCTGTTCA
CATCTGCCGGCTAGAGCCGAGGGATACTCCTGGTCCCTGATCTTCAGCAC
CTCACAACATGGTTTCGCACTGAACTCCCTGTACCGCAAAATGGCGCGTC
TGGAGAGTCCAGTTCTGATTGTCATTGAGGATACGGAGCACAACGTATTT
GGTGCCCTCACCTCCTGCTCACTGCATGTGTCGGATCACTTTTACGGCAC
CGGTGAGTCCCTGCTCTACAAGTTTAACCCCAGCTTCAAGGTGTTCCATT
GGACTGGCGAGAATATGTACTTCATCAAAGGAAACATGGAGAGCCTTTCG
ATTGGCGCTGGAGACGGTCGTTTTGGCCTGTGGCTGGATGGTGATCTGAA
CCAGGGACGATCGCAACAGTGCAGCACATACGGCAATGAGCCTCTGGCGC
CACAAGAAGACTTTGTTATCAAAACACTCGAATGCTGGGCATTTGTTGCA
AGCTTTCTAGACCAT
FMO13374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RI | 4838 | CG32464-RI | 366..1004 | 9..647 | 3195 | 100 | Plus |
| mtd-RQ | 2394 | CG32464-RQ | 298..884 | 61..647 | 2935 | 100 | Plus |
| mtd-RC | 2303 | CG32464-RC | 711..1300 | 58..647 | 2935 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5274149..5274318 | 514..345 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 5274732..5274895 | 347..184 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 5273950..5274082 | 647..515 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 5274966..5275088 | 184..62 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 5286900..5286955 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:43:05 has no hits.
FMO13374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:55 Download gff for
FMO13374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)82Fd-RI | 348..998 | 1..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:16 Download gff for
FMO13374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RI | 358..1008 | 1..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:08 Download gff for
FMO13374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RI | 358..1008 | 1..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:08 Download gff for
FMO13374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5273946..5274082 | 515..652 | 98 | <- | Minus |
| 3R | 5274149..5274318 | 345..514 | 100 | <- | Minus |
| 3R | 5274735..5274894 | 185..344 | 100 | <- | Minus |
| 3R | 5274966..5275087 | 63..184 | 100 | <- | Minus |
| 3R | 5286902..5286963 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:16 Download gff for
FMO13374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1099668..1099804 | 515..652 | 98 | <- | Minus |
| arm_3R | 1099871..1100040 | 345..514 | 100 | <- | Minus |
| arm_3R | 1100457..1100616 | 185..344 | 100 | <- | Minus |
| arm_3R | 1100688..1100809 | 63..184 | 100 | <- | Minus |
| arm_3R | 1112624..1112685 | 1..62 | 93 | | Minus |
