Clone FMO13375 Report

Search the DGRC for FMO13375

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:133
Well:75
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG4019-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13375.5prime Sequence

809 bp (809 high quality bases) assembled on 2013-02-11

> FMO13375.5prime
CAGTCGACATGAGCCACGAGATTCGTTGCTGTAAGGTCTTCAAAATGAAG
GGATCGACGCTGGACAAAATCTCCGCCTTCCTCGGCGAGCTCATCGGCAC
CGGCATCCTGGTCTTCCTGGGCTGCATGGGTTGCGTGAAGACGGACCTCT
TTCCCAACAACCATCTGCAGATTGTGCTGAACTTCGGCTTCGCCGTCCTC
ATCGCCATCCAGTGCTTTGGCTGCGTCTCCGGTGCCCATCTGAATCCCGC
CGTGACCGTGGCCGCCTACATCTACGAGATGGTCACCCTGCGCATGGCAT
TTGCCTACTTCGCCGCCCAGATGCTGGGCGCCTTCATCGGCTACGGCCTG
CTCATGGTCCTGCTTCCCTCGCCCACACTTACGGTGGGCGCTGGGCTCTG
CGTGACCTTGCCCCACACCAGCGTAACCACGGGCCAGGCCCTCGGCATCG
AGTTCGTAATCACCTCCATCCTGGTCATCGTCTGCTGCGGAGTGTGGGAT
CCGCGCAACTCCAAGTTCCATGACTCCGTGGGCATTCGATTTGGCCTGGC
CATCGCCTGTCTCGCCTGCGCTGCCGGTCCCTTCACCGGCGGCAGCATGA
ACCCGGCCAGGTCGTTCGCCCCCGCCCTGTGGAACAAGCACTTCGAGAGC
AACTGGATCTACTGGCTGGCCCCGCTGAGCTCCTCCGCCATCACCGCCTA
CGCCTACAAGGTCGTCTTCCGCCGCGAGGTGGTTGAGGCGGAGATCACCT
CCAATGAGAAGCTGCGGCAACTGGAGGACGTCCAGCTGTCGGCAAGCTTT
CTAGACCAT

FMO13375.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4019-RC 1138 CG4019-RC 112..894 9..791 3915 100 Plus
CG4019-RF 1271 CG4019-RF 261..1027 25..791 3835 100 Plus
CG4019-RE 1183 CG4019-RE 173..939 25..791 3835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23608131..23608682 576..25 2760 100 Minus
2R 25286936 2R 23607836..23608051 791..576 1080 100 Minus
2R 25286936 2R 23604625..23604800 352..177 400 81.8 Minus
2R 25286936 2R 23606358..23606443 267..182 205 82.6 Minus
Blast to na_te.dros performed 2014-11-28 18:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 4100..4150 799..747 116 71.7 Minus

FMO13375.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:56 Download gff for FMO13375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-RC 94..888 1..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:21 Download gff for FMO13375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-RC 104..898 1..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:13 Download gff for FMO13375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-RC 104..898 1..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:13 Download gff for FMO13375.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23607832..23608051 576..796 99 <- Minus
2R 23608132..23608681 26..575 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:21 Download gff for FMO13375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19495355..19495574 576..796 99 <- Minus
arm_2R 19495655..19496204 26..575 100 <- Minus