FMO13376.5prime Sequence
1069 bp (1062 high quality bases) assembled on 2013-02-11
> FMO13376.5prime
CAGTCGACATGCACATATGCATATACATGTCTATGTATAAGGGTGGTCGG
ACACCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCATC
TATATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAGGG
AGTTTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAAGA
TCCAGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGAGT
CAAAACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAATAC
CAAGAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATATTA
CTTGATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGGAA
CTCCGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTTGA
CATTTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAAAA
GTCGGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACAAG
GCAAAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACCTT
TACATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTTGG
GGCTGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGCGC
TGGAGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGTTC
CAGATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCTTC
ATTGTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGGAA
AAAACTATATCCAATTGTTTCGGCGGTCTGGGGACACTGTGAAATAACAA
TGCGTTACATTGGTGGATTAGATCCCGACCCTTGCCCTATGGATCTTTGC
CGAGACCATTCGTCAAAAATTGGTCGCACAAACTTGGAGGAGCACATTCA
CAGCTCACTTCTTTATCATGAAAACATTATTTATTGTATAAAACGTAGAG
CAGCTTTCTAGACCATTCG
FMO13376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 1525 | CG2944-RM | 139..1183 | 9..1043 | 4915 | 98.8 | Plus |
| gus-RK | 1813 | CG2944-RK | 308..1352 | 9..1043 | 4915 | 98.8 | Plus |
| gus-RI | 2040 | CG2944-RI | 308..1356 | 9..1043 | 4865 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120763..5121652 | 924..35 | 4450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:43:19 has no hits.
FMO13376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:57:57 Download gff for
FMO13376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RE | 306..1363 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:25 Download gff for
FMO13376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RK | 303..1360 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:15 Download gff for
FMO13376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RK | 303..1360 | 1..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:15 Download gff for
FMO13376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5120763..5121652 | 35..924 | 100 | <- | Minus |
| 2R | 5121773..5121803 | 1..34 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:25 Download gff for
FMO13376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1008268..1009157 | 35..924 | 100 | <- | Minus |
| arm_2R | 1009278..1009308 | 1..34 | 91 | | Minus |
