FMO13380.5prime Sequence
1127 bp (1021 high quality bases) assembled on 2013-02-11
> FMO13380.5prime
CAGTCGACATGAGTGGAGAGGAGGAGTACTTCCAGGAGGAGGAAGAAGAG
GAGCAGGAGCAGGATATTTACGACGATGGCACGGAATACACCGAACCGGG
TGCCCAGAAGGTAGACAAGCCGTCAAAGGACGAGAAGAACGTGGCCAAGT
GGCTGAAGAAGAACGTTAAGACGAAGAAGACCAAATTCCTGAGCCACATC
GTCGAATACTTCACCTCCAGCAAGGCCATCGATGCTCTGCTAAAGTCCAA
ATTCACCGAAGGCAGCAATCCGCTTTTCACCACCCGGGAGCAGGTAATCG
AGTTTCTAGACGTGATGCTGGAGCACAAGTTCTTCCATCGCGCCAAGAAG
GTGCCCGTCACTCTGGAGGAGATCAGAGGAAAGTCTGGAGGCGACAAGAA
GGCGGACAAGGAGAAGACCCAAGATAAGGAAAAGGACAAGGCAAAGGATG
AGAAGAAGGATACCGATCCGGAAGGCGATAATGGCCAAGGAGACGGAGGT
GCGTCTGGCAACGAAAAAGAGAAGGAGAAAAAGGAGAAGAAAAAGCGCAA
GATCCGCCTGGACATGCATCCTGAGCAGATCTTCGTGGACGGCTCCGAGG
CATACGTCTGGATCTACGATCCCATACCGCTCCACTACTGGATATTCGGC
TTCATCCTGCTACTTGGCGCCGTTGGCATTTGCCTATTCCCTCTGTGGCC
TCCACTGCTACGCAAGGGTGTCTACTACTTGTCCATTGCGGCTGCCGGCT
TCCTTGTTTTCATCCTGGCTCTGACAATTGTACGTCTAATTGTGTTCATC
ATCGTGTGGGCATTAACCGGCGGCAAGTTGCACTTCTGGATCTTCCCCAA
CCTGACTGAGGATGTGAGCTTCTTCGCCTCCTTCTGGCCACTATATGAGA
GCAACTATAACAGTGACCCAATAATTCGTCCGCCAGACCGACAAGAAATC
GAAATCGATGACAAGAGAGGAAAAGAAGCGATGCCGAGGACCAGCCGTGA
TGCGATGAGACGCTGACGGTGATGTGATGCTGAGTTTCCACGCTTGACCA
AGAAATCGAGCTCATCAGAACATGAACACCGACATGAGATCCGCACGTTC
GCAAAGTGGGTGCGAATGACCTCCAGG
FMO13380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trp1-RC | 1532 | CG4758-RC | 130..1260 | 9..1120 | 5065 | 97.7 | Plus |
| Trp1-RB | 2093 | CG4758-RB | 130..1260 | 9..1120 | 5065 | 97.7 | Plus |
| Trp1-RD | 1484 | CG4758-RD | 157..1212 | 84..1120 | 4690 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10010736..10011552 | 83..899 | 4085 | 100 | Plus |
| 2L | 23513712 | 2L | 10010483..10010558 | 9..84 | 380 | 100 | Plus |
| 2L | 23513712 | 2L | 10011605..10011667 | 898..958 | 215 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:43:40 has no hits.
FMO13380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:01 Download gff for
FMO13380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RB | 118..1261 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:36 Download gff for
FMO13380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RB | 124..1267 | 1..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:32 Download gff for
FMO13380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RB | 124..1267 | 1..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:32 Download gff for
FMO13380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10010737..10011552 | 84..899 | 100 | -> | Plus |
| 2L | 10010477..10010557 | 1..83 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:36 Download gff for
FMO13380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10010477..10010557 | 1..83 | 95 | -> | Plus |
| arm_2L | 10010737..10011552 | 84..899 | 100 | -> | Plus |
