FMO13382.5prime Sequence
1146 bp (1026 high quality bases) assembled on 2013-02-11
> FMO13382.5prime
CAGTCGACATGACTCTGCCTTGCCGCTGTTGTTGTTGTTCCGGCAAAGTG
ACAATCTTTCAATATTCAGCGAAAATGGTATCCGGTCGTCCTCTACTCTA
CCTCTCACTGCCCGGTGTAGCATTTATACTCGGCGTCTTTTGGTTTCGGC
GTAGATATAAAAATTGTTTAGACAAGCCCGACGACGAGGACTCATCGGCC
ATCAATGACTCGTCGATTGAACCAACTGTGCAGGCGCGCAAGGCCAACGG
AGTCCTGCAGAATGGCAAGCTGCCACAGCAGTCGGCCAGCAAGTCGATGA
ACATCAACGGAACTTTAGTTAACGGTAGCGGAAGCGGTAGCGGAAGTAGC
AGTGATGAGAAGGACAGCCCCACTACCATGTTGTATGGTAAATCAGCACC
AATCAAAATCCAGAGCAATGGACGCACTTCAAATGGCAAGCATCAGCAGC
AGATCGATTCCGAAATACTGAAGTCAAAGATACAGGATGCCGAACACAAG
ACACTCTGCTCCATAGACGAGGATTTCGAGAATCTATCGTCGCCACGTGA
TTTACCCGATTCGGTAAATACACGCGTATCCTTCTACAATCGTAAGGCTA
CCCAAAAGACGGTGGAACCGGTGGTGATTAAGGCCACGCGCACACCCAAA
ATATCGCCAGAGAACTCCTTCCTGGATACCAACTACACCAACAAGGAGTG
CGAGCAGAACAACAACTGTGAGCCCAAGGAGGAGCCCTCCAAGAAGGAGG
CCGATCATGAGGAGCTCGAGCAGATCAGGAGCAGACGGTGCTGAAGGAGG
AAGTGGTGGATAGCAATGGTAATCAGAAGCGCAATGTGGATGCGGCCAGT
CCATCGCTGAGCATTTGCAGTGTGCAATCGGGCGATTCTGGCAAGGGATC
CAGCTTGCCGCGCTCGGAGCGACACGCGTGAAAACCACCTACGAGTTCTC
TTCCCGATCAGCTTGATGGTCACCTGTACGGCCGCAGCGGGCGTTTATAC
CAATTCAAGGCCAAGACCCTGGCCAGGGGGTCTGTAGCAGAATCCCTACT
CGGGCCAAGGTGTCGCATCTGTTACATTGAGGACGGAAGACGGAGATGAA
GCGCTGACATGATCGTTCACGTGCGCCAAGCCATTCGAACTTTCAC
FMO13382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-RC | 4509 | CG3249-RC | 99..1179 | 9..1082 | 5060 | 98.4 | Plus |
| spoon-RD | 3668 | CG3249-RD | 743..1779 | 53..1082 | 4840 | 98.4 | Plus |
| spoon-RA | 3341 | CG3249-RA | 417..1452 | 54..1082 | 4835 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5416339..5417374 | 1082..54 | 4605 | 98.3 | Minus |
| X | 23542271 | X | 5420194..5420238 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:35:36 has no hits.
FMO13382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:56:32 Download gff for
FMO13382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yu-RC | 93..1188 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:23 Download gff for
FMO13382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RC | 93..1188 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:01 Download gff for
FMO13382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RC | 93..1188 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:01 Download gff for
FMO13382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5416364..5417374 | 54..1055 | 98 | <- | Minus |
| X | 5420194..5420243 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:23 Download gff for
FMO13382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5310397..5311407 | 54..1055 | 98 | <- | Minus |
| arm_X | 5314227..5314276 | 1..53 | 92 | | Minus |
