FMO13385.5prime Sequence
1157 bp (1030 high quality bases) assembled on 2013-02-11
> FMO13385.5prime
CAGTCGACATGAAACAGCGAAATCTTAGGAATAATAAAGCACTCAAACGC
CTCCAGCAGCCAGATAATAAAAATCTAAATTGTTGCTTGAGTAAACGTTG
CAACTATGAAAATATCTGGCAGCATTTCAATAGCAATGCCACCCTTGAGG
AAATTCGACATGCGGCCGCGCGTATTTGCCGAGACTATCTAACTGGGCCC
TGGAAAGTGGTTACTCCGGAGAGTTTGGTAGTGAAGCGCATAAGTGGCGG
GCTGTCAAATTTCTTGTATTACGTAAGCCTTCCCGATTTAAATGACTACG
ATGAGCTGGACGAACAGAAACAGCAGCAGGAAGACATCATAGGGGCCACC
GCAACTGTGACCAATAGAAGCGGAGTTTTCATACACGACGATGAGTCGGC
TGCCAAGGCGGTGGGCGTAACATTGATGGCGAGGGAATTAATAAATAACG
ATGACGTCGCCGACGCAGCTCCTGGCGCCACACAAGCACACAAACGTCAG
CGATGCGATAGTAATAGTCGCGAATGCAGTTCTTCGAAACGATTGCACGC
CCCCAAGCAGCAACCCCGTGAGGTCCTTCTGCGAATATATGGTCAGACCC
ATGGTGATCACGCCCTGGAGAGCATGATTACCGAGTCCGTGGTTTTCGCC
CTTCTCAGTGAACGGAACTATGGGCCCAAACTGCACGGAATCTTTCCGGG
CGGACGTATTGAACAATATATTCCGGCACGCGCTTTGACCACAGCAGAAT
TGGGAGAGCAACGAATATTAAAGAGAGTGGCTGAGAAAATGGGTGAGATC
CACAGTCTTAATATACCCATGTCTAAGAGCCCGATTGGATTTGGAATTGT
ATGCAGCGTTGGGTTTCCGGTTTAGAGAGCATTGTTAACGGCAGTGTCCA
AACGAATCAAAATCTTCGGTACTGAAGAAGCAAATGGAATTGATGCGGAC
CTTTGACTACGTTCAGGAGATGGCCTGATTAGTCGATTATCGATGAAGGA
GATTTTCAAGTGTGTTCTGTCATATTGATCCTGCAAGAGGTATATTCTGA
TGCCGACATCGTCAGCTGGTCAAACGACGGAACCCCGGGGAGTCATCAGT
AGCCTGAGATTCACTTCGACGAAACTTGGGGTGTAGCCTGAATGAAAGCA
ATTATCG
FMO13385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2201-RF | 2561 | CG2201-RF | 150..1292 | 8..1139 | 5215 | 97.9 | Plus |
| CG2201-RB | 2027 | CG2201-RB | 150..1292 | 8..1139 | 5215 | 97.9 | Plus |
| CG2201-RC | 1814 | CG2201-RC | 66..1079 | 137..1139 | 4570 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21617492..21617823 | 574..243 | 1660 | 100 | Minus |
| 2L | 23513712 | 2L | 21616182..21616574 | 1108..725 | 1265 | 92.9 | Minus |
| 2L | 23513712 | 2L | 21617279..21617434 | 726..571 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 21618495..21618625 | 138..8 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 21618004..21618110 | 244..138 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:43:58 has no hits.
FMO13385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:04 Download gff for
FMO13385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RB | 143..1298 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:48 Download gff for
FMO13385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RB | 145..1300 | 1..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:42 Download gff for
FMO13385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2201-RB | 145..1300 | 1..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:42 Download gff for
FMO13385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21616182..21616573 | 726..1108 | 94 | <- | Minus |
| 2L | 21617280..21617432 | 573..725 | 100 | <- | Minus |
| 2L | 21617494..21617821 | 245..572 | 100 | <- | Minus |
| 2L | 21618004..21618110 | 138..244 | 100 | <- | Minus |
| 2L | 21618496..21618630 | 1..137 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:48 Download gff for
FMO13385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21616182..21616573 | 726..1108 | 94 | <- | Minus |
| arm_2L | 21617280..21617432 | 573..725 | 100 | <- | Minus |
| arm_2L | 21617494..21617821 | 245..572 | 100 | <- | Minus |
| arm_2L | 21618004..21618110 | 138..244 | 100 | <- | Minus |
| arm_2L | 21618496..21618630 | 1..137 | 97 | | Minus |
