FMO13388.5prime Sequence
491 bp (491 high quality bases) assembled on 2013-02-11
> FMO13388.5prime
CAGTCGACATGAGCAGCGTCGATGAAGATCTTACACCCGAGCAGATCGCC
GTGCTCCAGAAGGCGTTCAACAGCTTCGATCACCAGAAGACTGGCTCCAT
CCCCACCGAGATGGTCGCCGACATACTGCGCCTGATGGGTCAGCCCTTCG
ACAAGAAGATCCTGGAGGAACTGATCGAGGAGGTCGATGAGGACAAGTCC
GGTCGCTTGGAATTCGGCGAGTTCGTCCAGCTGGCTGCCAAGTTCATCGT
GGAGGAGGATGCGGAGGCCATGCAGAAGGAGCTGCGCGAGGCGTTCCGTT
TGTACGATAAGCAGGGCAATGGCTTCATTCCCACCACCTGCCTGAAGGAG
ATCCTCAAGGAGCTGGACGACCAGCTGACCGAACAGGAGCTGGACATTAT
GATCGAGGAGATCGATTCCGATGGCTCCGGTACAGTGGATTTCGATGAAT
TCATGGAGATGATGACTGGCGAGGCAAGCTTTCTAGACCAT
FMO13388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC73F-RC | 1059 | CG7930-RC | 193..659 | 7..473 | 2335 | 100 | Plus |
| TpnC73F-RA | 962 | CG7930-RA | 96..562 | 7..473 | 2335 | 100 | Plus |
| TpnC47D-RB | 791 | CG9073-RB | 70..519 | 24..473 | 1515 | 89.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17047350..17047601 | 196..447 | 1260 | 100 | Plus |
| 2R | 25286936 | 2R | 11274580..11274829 | 447..198 | 905 | 90.8 | Minus |
| 3L | 28110227 | 3L | 17046341..17046460 | 21..140 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 11274890..11275061 | 195..24 | 485 | 85.5 | Minus |
| 3L | 28110227 | 3L | 17046522..17046579 | 138..195 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:44:16 has no hits.
FMO13388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:07 Download gff for
FMO13388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC73F-RA | 87..561 | 1..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:03 Download gff for
FMO13388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC73F-RA | 91..565 | 1..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:51 Download gff for
FMO13388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC73F-RA | 91..565 | 1..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:51 Download gff for
FMO13388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17046341..17046458 | 21..138 | 100 | -> | Plus |
| 3L | 17046523..17046579 | 139..195 | 100 | -> | Plus |
| 3L | 17047350..17047601 | 196..447 | 100 | -> | Plus |
| 3L | 17047965..17047993 | 448..477 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:03 Download gff for
FMO13388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17039441..17039558 | 21..138 | 100 | -> | Plus |
| arm_3L | 17039623..17039679 | 139..195 | 100 | -> | Plus |
| arm_3L | 17040450..17040701 | 196..447 | 100 | -> | Plus |
| arm_3L | 17041065..17041093 | 448..477 | 93 | | Plus |
