FMO13395.5prime Sequence
190 bp (190 high quality bases) assembled on 2013-02-11
> FMO13395.5prime
CAGTCGACATGGATGCTCCCACCATCAAGCTTGAGTCCTCGGATGGGATG
ATCTTTTCAACGGAAGTCCGAGCCGCCAAGCTCTCCGAAACCATCAAGAC
CATGTTGGAGGTCTCTGCCGTGGAGAACGACGAGAATGCCATTGTGCCGC
TGCCCAAGGTGAACGCGTTCATCCTATCCAAGATTCTGAC
FMO13395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpC-RA | 629 | CG11941-RA | 67..248 | 9..190 | 910 | 100 | Plus |
SkpD-RA | 656 | CG12700-RA | 73..254 | 9..190 | 820 | 96.7 | Plus |
SkpE-RA | 713 | CG11942-RA | 82..260 | 9..187 | 520 | 86 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19816138..19816319 | 9..190 | 910 | 100 | Plus |
X | 23542271 | X | 19812801..19812982 | 9..190 | 820 | 96.7 | Plus |
X | 23542271 | X | 19823821..19823999 | 187..9 | 520 | 86 | Minus |
X | 23542271 | X | 657113..657258 | 18..163 | 235 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:43:46 has no hits.
FMO13395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:02 Download gff for
FMO13395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpC-RA | 1..182 | 9..190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:41 Download gff for
FMO13395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpC-RA | 1..182 | 9..190 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:35 Download gff for
FMO13395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpC-RA | 67..248 | 9..190 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:35 Download gff for
FMO13395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19816138..19816319 | 9..190 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:41 Download gff for
FMO13395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19710171..19710352 | 9..190 | 100 | | Plus |