FMO13396.5prime Sequence
779 bp (779 high quality bases) assembled on 2013-02-11
> FMO13396.5prime
CAGTCGACATGAGTGGATTCATTGTCCTATGCCTTTGCTCCGTGGCTCTA
GCCGCACCCCAGGGCTACAACTATAACCCTGGCCCGTCCGGCTTCGGTGG
CATCAGCACCACCACCGGTGGAGGCTCCTTCTTCCAAGGCGCCGTCCAGG
TCGCCCCCGTGCAACCGCAGGCCGTCTACCAACAGCCTGCCGCACAGACT
CACCACCACCAGCAGCAGCAGGTGCAGCAGCAGCAGGCCATCGTCTCCAA
GCGCTTCTTCATCCACTCCGCCCCGGAGGAGGCTGAGGATTACAAGGAAC
GTCACATCACCGTCGGCGTGCCCAAGCGCAACTACAACGTGGTGTTCATC
AAGTCGCCGCAGCGCAACAACAGGAAGACCATCAAGATCAGCCCCGCCGC
CAACGAGGAGAAGACCGTCATCTACGTGCTGAGCAAGAAGGGCGAAAGCG
ACTTGAACGCCGAGGTAGTGGAGCAGGCCAGCTCCACCAGCAAGCCGGAG
GTCTTCTTCATCAAGTACAAGACCAACGAAGAGGCCGCCCACGCCCAGCA
GCAGATCCAAGCCCAGTACGACGCTCTGGGCGGCAGTAGCCAGTTGACCG
ATGAGGGAGTGGCCCCAGTCACATCCGTGATTGGAGCGCTGGGTGGCAGT
GACGGTCACATCGACGGCGGATCCGTTGTGGGCGCCACAGGAGCTGGTCA
GATCGTCTCCACCGGCACTGCCGGATCGCACACGGGCAATGCATACCTGC
CACCCAATTTCGCAAGCTTTCTAGACCAT
FMO13396.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlV-RA | 1067 | CG14640-RA | 73..825 | 9..761 | 3765 | 100 | Plus |
| TwdlY-RA | 1034 | CG32570-RA | 611..709 | 487..585 | 270 | 84.8 | Plus |
| Twdlalpha-RA | 1354 | CG32574-RA | 846..931 | 487..572 | 250 | 86 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4254854..4255591 | 24..761 | 3690 | 100 | Plus |
| X | 23542271 | X | 16735557..16735655 | 487..585 | 270 | 84.8 | Plus |
| 3R | 32079331 | 3R | 4247807..4247889 | 492..574 | 250 | 86.7 | Plus |
| X | 23542271 | X | 16743774..16743840 | 487..553 | 230 | 89.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:43:51 has no hits.
FMO13396.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:03 Download gff for
FMO13396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlV-RA | 1..756 | 9..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:06:45 Download gff for
FMO13396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlV-RA | 66..835 | 1..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:39 Download gff for
FMO13396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlV-RA | 66..835 | 1..775 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:39 Download gff for
FMO13396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4254854..4255594 | 24..765 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:06:45 Download gff for
FMO13396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 80576..81316 | 24..765 | 99 | <- | Plus |
