Clone FMO13401 Report

Search the DGRC for FMO13401

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:134
Well:1
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31928-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13401.5prime Sequence

477 bp (390 high quality bases) assembled on 2013-02-11

> FMO13401.5prime
CAGTCGACATGCAGTCTTCGCCGAAACTCGCACTGGCACTGACCTTAGTG
CTGATTTGGTGCCTGGCCCAAAGTCATGTGGAATCCAGAAGATGGCGAAA
GTCCGTGCAACTGAAACTGCACAGGGAAACGAACCACACCAAAATACTGA
GCAGTTTCCACAACCAGAAGCTTAGACTCAAGGAAAAACTGAGCCCGACC
AGCGATTTGGCGATATCCTCGGTATCTGTATATCAAACAACCGTGTCAAA
AGAGAACCTGATCAATTCCCACAACACCGAGTACTATGTTACGGCCGGTT
TCGGGACGCCCAAGTCGCAGCCAGTCACTCTTCTGGTGGACACCGCCTCG
GCGAATCTGCTGGTCTACCCCTCGGAGTTTGTGAAACAGTCCTGTTTGCA
CCACCAATGGCTACCATTCCAGTGAGTCGCAACGTATCAGGCCATGGATT
GCCCTTTCAGATACGTCCGCATCCGCA

FMO13401.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31928-RB 1565 CG31928-RB 20..486 9..473 2165 98.1 Plus
CG31928-RA 1351 CG31928-RA 20..486 9..473 2165 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1492314..1492770 9..464 2080 98.5 Plus
Blast to na_te.dros performed on 2014-11-28 18:44:49 has no hits.

FMO13401.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:19 Download gff for FMO13401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31928-RA 12..488 1..476 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:27 Download gff for FMO13401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31928-RA 12..488 1..476 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:14 Download gff for FMO13401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31928-RA 12..488 1..476 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:14 Download gff for FMO13401.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1492306..1492782 1..476 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:27 Download gff for FMO13401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1492306..1492782 1..476 97   Plus