FMO13404.5prime Sequence
1049 bp (1041 high quality bases) assembled on 2013-02-11
> FMO13404.5prime
CAGTCGACATGGTTTACGAAAGTGGATTTACGACCCGCAGAACCTACTCC
TCGAGGCCGGTGACAACTTCCTACGCAGTTACGTACCCCTCGGTCGAGAA
AGTAACTCGTGTGTACAAGTCGAGTTACCCCATCTACTCGAGCTACTCGG
TGCCACGCCGCGTCTACGGCGCAACCCGGGTGGTGACCTCGCCCATCCGC
GTGGTAACCTCGCCTGCCCGCGTGGTGTCCCGCGTCATACACTCACCATC
GCCTGTTCGCGTTGTCCGCACGACGACCCGAGTGATTTCATCGCCGGAGC
GCACCACCTACTCCTACACCACGCCATCGACCTACTACAGCCCCTCCTAC
TTGCCATCGACCTACACTTCGACCTACATCCCGACATCGTACACCACGTA
CACGCCGTCCTACGCCTACAGCCCGACCACGGTCACCCGGGTGTATGCCC
CACGCAGTTCGCTGTCGCCGCTGAGGATCACCCCCTCGCCGGTGAGGGTC
ATCACCAGCCCGGTTCGCTCTGTGCCCTCCTATCTGAAGAGGCTGCCGCC
TGGTTACGGTGCCCGCGCCCTGACCAATTACCTCAATACCGAACCCTTTA
CCACCTTCTCCGAGGAAACAAGCCGGATTCGCAACCGCGCGCAATCTCTG
ATTCGTGACTTGCACACTCCCGTGGTGCGCCGTGCACGTAGCTGCACTCC
CTTTCCCGTCACTGGTTACACCTATGAGCCGGCCTCGCAACTGGCCCTAG
ATGCCTATGTGGCCCGTGTCACAAATCCTGTCCGTCATATTGCCAAGGAA
GTTCACAATATTTCGCACTACCCCAGGCCAGCAGTGAAATATGTTGGTAA
AAGTCATCTTGCATCAGTAAGGATTTGCGGTGACAAGCCTATAATGTTAG
AAGTCCGTTGTACGATACGGACAAAGTTCGAACTGATATTACCTCTTGTC
CTGTACTTTAGACACCCGACTTGGAAGAATGAATAAGAAATCCAAGATCT
GTGAGGAAGCTGAAGCTGTGAGTTGAGGCGCCAGCTTTTCTAGAACAAT
FMO13404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45076-RI | 2109 | CG45076-RI | 122..1151 | 7..1029 | 4900 | 98.9 | Plus |
| CG45076-RE | 1215 | CG45076-RE | 122..1151 | 7..1029 | 4900 | 98.9 | Plus |
| CG45076-RH | 2199 | CG45076-RH | 122..961 | 7..846 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10772113..10772604 | 602..111 | 2460 | 100 | Minus |
| 3R | 32079331 | 3R | 10771333..10771468 | 850..715 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 10771860..10771972 | 715..603 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 10771057..10771206 | 993..846 | 540 | 96.7 | Minus |
| 3R | 32079331 | 3R | 10777177..10777253 | 83..7 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:44:57 has no hits.
FMO13404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:22 Download gff for
FMO13404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RE | 112..1145 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:32 Download gff for
FMO13404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RE | 118..1151 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:19 Download gff for
FMO13404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45076-RE | 118..1151 | 1..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:19 Download gff for
FMO13404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10771067..10771205 | 847..982 | 97 | <- | Minus |
| 3R | 10771337..10771467 | 716..846 | 100 | <- | Minus |
| 3R | 10771860..10771972 | 603..715 | 100 | <- | Minus |
| 3R | 10772113..10772604 | 111..602 | 100 | <- | Minus |
| 3R | 10773135..10773161 | 84..110 | 100 | <- | Minus |
| 3R | 10777177..10777257 | 1..83 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:32 Download gff for
FMO13404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6596789..6596927 | 847..982 | 97 | <- | Minus |
| arm_3R | 6597059..6597189 | 716..846 | 100 | <- | Minus |
| arm_3R | 6597582..6597694 | 603..715 | 100 | <- | Minus |
| arm_3R | 6597835..6598326 | 111..602 | 100 | <- | Minus |
| arm_3R | 6598857..6598883 | 84..110 | 100 | <- | Minus |
| arm_3R | 6602899..6602979 | 1..83 | 96 | | Minus |
