Clone FMO13405 Report

Search the DGRC for FMO13405

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:134
Well:5
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42465-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13405.5prime Sequence

245 bp (245 high quality bases) assembled on 2013-02-11

> FMO13405.5prime
CAGTCGACATGAAAGTATATATTTTGATCTGGACAATATTAGCTCTAACG
GCGGATATAAATGGCTTGGTTTGTAATCTTGAACCTTTTGTCCAAGGATC
ATGCCTGGAATTGACAGACCTCTATTCCTATGTTGAATATAAAAACGATT
GTGTATACTGGCAGGGATGCCTTCTGAATGGAAATCATTTTAGCAAAAAA
GAGGAGTGCGAAGACATGTGCAAGCAAGCAAGCTTTCTAGACCAT

FMO13405.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42465-RA 401 CG42465-RA 51..269 9..227 1095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3700366..3700526 67..227 805 100 Plus
2L 23513712 2L 3700245..3700302 9..66 290 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:45:00 has no hits.

FMO13405.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:23 Download gff for FMO13405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42465-RA 1..222 9..231 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:33 Download gff for FMO13405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42465-RA 43..280 1..240 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:22 Download gff for FMO13405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42465-RA 43..280 1..240 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:22 Download gff for FMO13405.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3700237..3700302 1..66 95 -> Plus
2L 3700366..3700537 67..240 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:33 Download gff for FMO13405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3700237..3700302 1..66 95 -> Plus
arm_2L 3700366..3700537 67..240 97   Plus