FMO13406.5prime Sequence
1155 bp (1053 high quality bases) assembled on 2013-02-11
> FMO13406.5prime
CAGTCGACATGGCCGAGCTTCTGTCCCGCGAGAAGGAGCTCTTTAAGATA
AACCAGGAGCTGAATCTCCTGACCCTCAGTCCAGCTGCCGACGCCATGTA
TCCGGCAAAGGGGTCATCCAAATCCACTGCGGTGGCGGTGCCGCGCTTCG
CCACCTTCCAGAAACAAAAGGGGCCGAGCAGCCTGCTCCGGAAAAAGGGT
GCTCCCACGGCGTGCACGAAGGCAGCCCCGAAAGCTTCGCCAGGCAGAGA
GACGGTGCCCACAGCCCGTTCGCCGATGCCCGATATGAGTCTGCTGACCA
AGTCCAAGCCCGCTGCCGGACCCACCTCGCCCACCCCCCGCAATCTTTCC
AAATTTAGTACCTTCACGAAGGATGTGAGCAGCAAGACGGCTACGTATGT
CAAGTACCGGAACCCAAACTTTAGCGAGAGTCCTTCGTTGGACGAACTGC
TGCGTAACGACGCCGATGAGGCAAACCGAAAACCAGATGTGGTCGAAGTG
GAGGTCACACAGAAGCGAGAGAGCACAACCGTCGTCAATGGCCAGCTGAA
GAAGCAGGTCACCAAGGACAACTTTATTAAATTCCTCAAGGCCAAGGTGG
CCATTCTGGAAGAGGATCACGCTCAACACGCCGGAGAGTTGATCCGACAG
AAGGAGCAGCTTGAGCACGCCTTGGAAGCGCAACGCAAGTCAGAGCACCA
GCGCGACCAGGCGATCAACTCCAACAAGCACCTCTCCGAGCAACTGATGC
GGTCCGAACGGCAGTGCGAGGGTTTCAACCAGCGCCAGAAGGAGCAGCAG
CTCGAGTTCATCACCCAGCAGCGGGAGCTGGAGGTGCTGAAGCGGGATGC
CAAGGTTTCCAGGCAGACGAACATAAACCTGGAGAACCGACTGTCCCGCG
TCCAGGAGGATGCAGACGCTGCCCGCCAGGAACTCAAGCTGCTGCGCGAG
GAGCAGCGCGACCAGTTGGAGCCGCATCGGAGGAACTAAAGCTGCGGGAC
AGCCGATCCGGGCTCTTAAACGCCAGCGGCGGCGACTGCTCACGCGTACA
GGAAGCAGCTCTTAATTGATCGACACCTGAGCGCCCAGAACATCTGTTTG
GAGCAGTCGCCAGCCATTCGAATCCGCGAAAGGATCACAAGGGCTCGACT
GAATG
FMO13406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4681-RA | 1497 | CG4681-RA | 230..1380 | 9..1151 | 5265 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24579027..24579598 | 580..9 | 2845 | 99.8 | Minus |
| 2R | 25286936 | 2R | 24578403..24578946 | 1117..577 | 2220 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:02 has no hits.
FMO13406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:24 Download gff for
FMO13406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4681-RA | 177..1313 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:36 Download gff for
FMO13406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4681-RA | 223..1359 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:24 Download gff for
FMO13406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4681-RA | 223..1359 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:24 Download gff for
FMO13406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24578385..24578942 | 581..1134 | 96 | <- | Minus |
| 2R | 24579027..24579602 | 1..580 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:36 Download gff for
FMO13406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20465908..20466465 | 581..1134 | 96 | <- | Minus |
| arm_2R | 20466550..20467125 | 1..580 | 99 | | Minus |
