FMO13408.5prime Sequence
893 bp (893 high quality bases) assembled on 2013-02-11
> FMO13408.5prime
CAGTCGACATGTTCGAATGCATAAGTTTCTTGTTCCTGGCTGCCTTGGCC
TTCGTGGCCTGGGCCGTTCTCTGCTTCCAGCACTTCGTCCAGGTCCAGAC
GCGGCTCTCCTCTGATTTCCGAGTCGAATTATACACAGAGCGTCCTGGGA
TTACGTTTGAGCCGCAGCTGTGCCACAGTCCCTCAGAGCAGAGTAGCTCC
GACAGCTCCGACAGCACCTACCAGTTTGCGACGAGCTTCGGCGTGATCTT
TGCCCTGACCTTTGGTCTGTCCAAGCTGCTCCAACTGGCGGAGCTGCAGG
CCAAAAGGTATTTCAAGAGCAAAAAGGCGCTGCATCCCAAATCTGCTGCC
AAAGTGCAGGACCCAGTTGTTGAGCAGAAGGCGCCAAGCCAGCAGGACGA
TTCGAATCCCTTCGATCTCCTGCAGGACCACAATGAAAATCTGAAGGAGC
AGCTCAGTATCCTGCAGTTGCAGTGTCTGGAAATGCGCGAACTTCTGCAC
GAGCTGGATATCAGCAGTAGCTCCAGTAGCTATGGAAGTGTCAGATCCGG
AAACCGGGTAGCAATGGCCAAGTCCTCCGAAGAATCAATGGTGGTGTGGA
GGCGATCGGACTCCCTGACCGGTACGGTCTCCGGCTCATTGCACGCCGAA
AAGGTCAACTCCCCCTCCACACAAAACATCTACATTACCAACAGCCACTT
CCACATCAACGGACAGGTCTACCTGACCGAGAACCACGTGAACGTCGAGC
TCACCCAGAACGCTTCTTTGTTCGGTCGGGGGCAGAGCGAGTTCCTGCAG
GTGGCGGGAAGGTTCATCTCCGGACCAAAGAAGATGCCCATGTTAACGGG
CATGCGGTGCCACAACATCCTCATAGCAAGCTTTCTAGACCAT
FMO13408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7202-RA | 986 | CG7202-RA | 67..934 | 8..875 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21491451..21492191 | 875..135 | 3705 | 100 | Minus |
| 3L | 28110227 | 3L | 21492577..21492707 | 138..8 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:08 has no hits.
FMO13408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:27 Download gff for
FMO13408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7202-RA | 67..934 | 8..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:39 Download gff for
FMO13408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7202-RA | 67..934 | 8..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:27 Download gff for
FMO13408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7202-RA | 67..934 | 8..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:27 Download gff for
FMO13408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21491451..21492187 | 139..875 | 100 | <- | Minus |
| 3L | 21492577..21492707 | 8..138 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:39 Download gff for
FMO13408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21484551..21485287 | 139..875 | 100 | <- | Minus |
| arm_3L | 21485677..21485807 | 8..138 | 100 | | Minus |
