FMO13410.5prime Sequence
1096 bp (1014 high quality bases) assembled on 2013-02-11
> FMO13410.5prime
CAGTCGACATGTTGGATGATTACTACACCTGGACTTACCCGGATATACCC
GAAAATGTGGCACAGGAGCTGCTGCAGCTGAACGGTTCGCTGGTAGTGGT
CGGAATCGTTGGCCGGTCGGATTGCGACCAGGCCAACAAGATGGTGGCTT
TCGGCATGGAGCCGCCTAGTGAGCACACACCCAAGGACGGCCAGATGCAG
TGTTACTACAAGCCGGGTACCTCCATCCTGCTGCTGCACTTCGAAAGCAC
CTACGACGCGGAGATTGCTGGCCAGATGATAGATGTCTGCATAGAGGATG
TGGATACTCCCTTCGACATCGACAGCTTCTTCGAGGGGATACGATGTCGC
TTCGTGCGCATGATGCTGCTGGCCCTGCACGTTTGCCACATTGTGGTGTA
TGTGGAAACTGGGCAGACGTTTGATCCGACACTAATCACCGTGTTCCAAT
TGGCCAAGTTCGCCAGGGAACAGCATTTGATGCAGTTCTTGCCACAAATG
CTTAGAGAAACGCCTGCCGCCAGAATGAGCGAGCGCACACGACTGTGCAC
TCCCAGGATTCTCTTCCTTTTCGAAAACTTTCCGAGCGACGAGCCAAAGA
CACGCGAATGCGTCTCTACATACGAGTTCCAGATGGAGGACTGCATCTAT
GAGTTGTTGCGCCACCACAACATCGTGACCAATAGCAGCAGCAACTCGCT
TGTGGCACTTCCCAATAACAAACAGTTCGTCTTCTTCAACGCACACGAAG
AGTTGCGTGAGGACACGCTGATGAAGGCCGTCGAATGCCTCAATGAGACA
ATGTACAAGCCGGATCTCAAAGAGGAGGAGGAGACCTAGAGATCTTGGCG
CTGGCTCCCTTCGATGGCTTCGTCAATCCTTCGCCTTGCCGGTCGATGAG
AAGGAGTGGATATCAGCAGTACAAGAAGACCACACCGTGTGAACTTTTCT
GGAGCCGACCCGTTCAGGATGCCTTGATGGTTGCTTTGAAGCGGGTTCCT
TCAAGCAGCATGCCCCGCAGGTACGTTCCACCTCCTAATAGCATGATTGT
CCTGACTTGCATATCCGAATGCACAGGTGCTGGTGGAGACCCTTAG
FMO13410.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6729-RA | 2993 | CG6729-RA | 62..1103 | 9..1043 | 4825 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10742788..10743770 | 1038..62 | 4360 | 97.9 | Minus |
| 2L | 23513712 | 2L | 10743822..10743874 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:44:39 has no hits.
FMO13410.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:15 Download gff for
FMO13410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6729-RA | 53..1158 | 1..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:21 Download gff for
FMO13410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6729-RA | 54..1159 | 1..1096 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:08 Download gff for
FMO13410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6729-RA | 54..1159 | 1..1096 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:08 Download gff for
FMO13410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10742726..10743770 | 62..1096 | 96 | <- | Minus |
| 2L | 10743822..10743882 | 1..61 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:21 Download gff for
FMO13410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10742726..10743770 | 62..1096 | 96 | <- | Minus |
| arm_2L | 10743822..10743882 | 1..61 | 95 | | Minus |
