FMO13412.5prime Sequence
1110 bp (1017 high quality bases) assembled on 2013-02-11
> FMO13412.5prime
CAGTCGACATGGACAAGGCACAACATCCACAGAAGCGGGAACAGAAGGAG
GAGCTGGGAGGTAAGCCGGAGGAGAAGGAGCCAATTTGCGAGGAGCAGCA
CGACGAAGAGTCCAACGAGCAGGGGGAAACACACAACGAGGGTGGGGAAA
TGCCAAATAAAACCGATAAGCAAATGCAGGGGGGACGAGAGCCCATCTAT
GAGAATGTCAGCTCGACTATATCTATGCATGAAGTAGATAATGAACAGAT
AGCAACTATGACGATAACCACACAGACCCAAGCGACGCGAATAAGTCACA
GGAGAAGCATTCCAAGCCAGCAAACCAGCAACAGTAACGAGAATAATCAA
AGCACTAATCAAACCAGCAACAGCAGGAATCAAAAAGAGAGCAGCACAGC
AGCAACATCGGCAGCGAACCCCGTGCCACCAACAACACCGGGGGAACAAG
CAGAGCCCTACTACCAAGTGCCGAAGGCCACGGAGCCCTACTACGATGCC
CCCAAGCATTTAAGGCCGGTGCCGGTATACGAAAATGTCGAGATCTTTTA
CTCGGGCCTGGAGATTAGTCAGGGATCTGTGGGAGCGCCAGTAGGGCTGA
TGGAGCCACCCAAGGAAAAGCCACCACCACCGCCCACCGAGAGTCCGATT
CCGCTGGACGAGGGCCATGACGACGAGCTGGATGGACTGGGCAACAGTCT
GGGCCACAACACAGACACCTGGTCATCGGACAACACCTACGAGACCATAT
CGAACGGCACTCGCCGGCACCTTCAGGGACAACCGGAACCCGCCCAACCC
TCGCCGCCCATCAAGAGGATGAACTCGACCAACGGATCAAGAAAGGAGTT
GCGCAACAAGCGCTCCAGCTTCCTGGCATCGAAAACGACGGCGATCTTGA
CGACATGGAGACTATCTCGAGCTACAGTGGCCCCGCTTCCGGATATGCGC
AGCTTCTTGCAGAGAGCGCGACTGAGAAGCAGCTGTACATCAAGGCGGGA
CTTCTTGCGACAGTTCGACCAAGTGAAAGCCGCGATTCTGAGTTTCTGAA
ATCCACTCCTCGCCAGAGCATGGAGCACATAACCGAACTTCTCTTGAAGG
AAACGGATTC
FMO13412.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43427-RJ | 4163 | CG43427-RJ | 281..1372 | 9..1094 | 4920 | 97.6 | Plus |
| CG43427-RI | 3810 | CG43427-RI | 281..1372 | 9..1094 | 4920 | 97.6 | Plus |
| CG43427-RH | 6180 | CG43427-RH | 2546..3637 | 9..1094 | 4920 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4707086..4708086 | 9..1002 | 4470 | 98.7 | Plus |
Blast to na_te.dros performed 2014-11-28 18:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6883 | 225..441 | 170 | 58.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1154 | 350..436 | 158 | 71.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1175 | 299..407 | 146 | 63.7 | Plus |
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 7205..7320 | 646..759 | 125 | 57.8 | Plus |
FMO13412.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:18 Download gff for
FMO13412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31534-RB | 274..1367 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:24 Download gff for
FMO13412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43427-RH | 2539..3632 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:11 Download gff for
FMO13412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43427-RH | 2539..3632 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:11 Download gff for
FMO13412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4707079..4708106 | 1..1022 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:24 Download gff for
FMO13412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 532801..533828 | 1..1022 | 97 | -> | Plus |
