FMO13413.5prime Sequence
1129 bp (1044 high quality bases) assembled on 2013-02-11
> FMO13413.5prime
CAGTCGACATGAATTCGCGACGGATTGCTCTGGTCCTCCTAATCGGCATA
ATCGTTTCGTTTTCTGGCCATGATGCACTAACCTATCCGGAGCGCTTCGA
TCGCCTGCCCACTTGGGGTGGTCATTCCCAAATTGGTGGGCCGCTGCTGG
ATACCGCCCACCGGGAGAATCGTGAGAAAAGGGAGAATAGGGTGGACCTG
TGCCGGCACTGTTTCTGCATTCATCTCAAGGCAATCTGTGATTACAAGCT
TAACAAAACGCTCCCGAACGAATTTAACGATAAACTATTGGTGCCGCTGA
ACATCAAATATATTGAGGTGCGACTGACTGTTGGCACCCAGTTCGTGATG
TACGAGAACTTCTTCCAGGACAACCAGGTGAACTACTTTGGTGTAATCGG
AGTGGGGAAAGATGACCAGGTGGAAATAACCAGCAATGCATTTAGCCACA
ACAAAGGCGGTTTTCCCAACATCGAAATACGAAATGTATTGCGAGTTTTT
CTGCGTGAGAAATTCCTGACCGGTGCGGACTACAAGCTGCTGGTGGAGGA
TGTTACTCAGCTGTCCGTATTCTCCAATGCCCTTCAGATGACTAATCTAG
ACTGTTCTCTCAAGCGGATCAAGGAGCTGAATCTGATGAAGAACGCTTTC
AATCCTGGGGTTGCCAAATATGGAATAAATCTCCGCATCGAGGATTCGAA
CATCAATCAGCTGGGTATATTCGGCGTGTCCATGGGCAAGGTGAGCCTGT
TGCGCTGCCACATCGACATGATCATGAGCAACGCCTTTGACGTTACCAGC
ATCAAGGAGCTGATTATCGAGGGCTGCAATATCGAGGTGATCGAGAGCCA
GGCGCTAACCAACAAATTGCATAGCGATAACGTGGCCATCGTGGATACGG
TGATCGGTACGATTGAGGGTCAGCGATCAGTCAGAGCGGTATAACTACCA
TGATTATGTTTGGAAATACAATTACAAAATACGTTCGAATGCCATTCAAA
TTGTTGCCGTAGTCTGTCATACGCACAATTCAATGAGCCATGGTGGAGCC
AATTGGTTGAGTGTCAGCCAGCGATCAGTTGGAGATTGCCATATCGCTTT
CAGAACACGGAGCGCTGTGACCTGACATT
FMO13413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| be-RF | 3069 | CG32594-RF | 268..1393 | 9..1125 | 5205 | 98.1 | Plus |
| be-RC | 3240 | CG32594-RC | 268..1393 | 9..1125 | 5205 | 98.1 | Plus |
| be-RB | 4014 | CG32594-RB | 268..1393 | 9..1125 | 5205 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15031178..15031467 | 681..969 | 1385 | 99.3 | Plus |
| X | 23542271 | X | 15030585..15030849 | 260..524 | 1325 | 100 | Plus |
| X | 23542271 | X | 15024703..15024954 | 9..260 | 1260 | 100 | Plus |
| X | 23542271 | X | 15030910..15031068 | 522..680 | 795 | 100 | Plus |
| X | 23542271 | X | 15031550..15031668 | 976..1089 | 275 | 89.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:45:22 has no hits.
FMO13413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:32 Download gff for
FMO13413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| be-RB | 266..1357 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:48 Download gff for
FMO13413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| be-RB | 264..1355 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:36 Download gff for
FMO13413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| be-RB | 264..1355 | 1..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:36 Download gff for
FMO13413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15024699..15024954 | 1..260 | 98 | -> | Plus |
| X | 15030586..15030847 | 261..522 | 100 | -> | Plus |
| X | 15030911..15031068 | 523..680 | 100 | -> | Plus |
| X | 15031178..15031467 | 681..969 | 99 | -> | Plus |
| X | 15031543..15031668 | 970..1089 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:48 Download gff for
FMO13413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14918732..14918987 | 1..260 | 98 | -> | Plus |
| arm_X | 14924619..14924880 | 261..522 | 100 | -> | Plus |
| arm_X | 14924944..14925101 | 523..680 | 100 | -> | Plus |
| arm_X | 14925211..14925500 | 681..969 | 99 | -> | Plus |
| arm_X | 14925576..14925701 | 970..1089 | 92 | | Plus |
