FMO13414.5prime Sequence
1142 bp (1050 high quality bases) assembled on 2013-02-11
> FMO13414.5prime
CAGTCGACATGAATCGCTTCGCTTATGTGGAGGCCCGTCTGAGTCCCAAT
GAATCCTTCGTCAGCCGCGACAACAGGGTAAAAATATACGATGGCGACCA
AAAGACGGACTTTGAAGACGGCGAAGTGGTGCTCACCACACACCGACTGT
TTTGGGGTCGCCCTGGAGAGATTGCCCGGGCCGCCGTAACACTTTGCCTG
CCACTCAGCTATGTGATATCCGTCAGCGAAGAGACTACTGCCTCTAACTT
CTTTGGCCGCAAGACTCGCATAATCATGCATCTGCATCCTCCAACGTCGG
ACAAAGGACCCGGCCCACTGGACACCAGTCGCGCCACCCACATCAAACTG
TCGGGCAAGAATGGCCTGAGTGTCGAGTTCCACAGTGCCTTGCGGGAGAC
TCTAAATGCCCGCGTCTGGGAAATCCTCTTGACCAGCGAGATCATCATCA
ATGGCGTGGCCAGCAGTCCAACCTTGGAGCCTGCCAACGACAGGCTGGCC
CGCATTCAGAAGAGGACAGGAATTGGGGGCATCGAACGGCATTTGGAGGC
AAAAGCCAAGGCCACGGATGAGAACATAGCACTTGCCTTTCAGGATCTCA
GTGTTCTAATGGCCATGGCCAAGGACATGGTAGGAGTGTCCAAGACAATA
AGCAGCAAGATACGCAAACAGAAGGGAGAAATATCTGACGATGAAACGGT
GCGTTTCAAATCCTACCTCATGAGCCTGGGCATCGATGATCCCGTCACGC
GGGACAACTTTACCAGCAATTCTGCCTACTTCAGTAGCCTGGCCCGACAG
ATTTGCGAAATGCTGCTGGATCCTATCGAGGAGCAAGGTGGCATGATGTC
CTTGGCTGATGTCTACTGTCGTGTAAACCGCGCTCGTGGTCTGGAACTGC
TATCGCCTGAGACTTGCTGCACGCCTGCGAGCAGCTTAGTGGTCCAATAC
GCCTGCGCAGCTTTCCCAGTTGCGCTAGAGTGCTACACTGGAGTCCCACG
ATGATGCCTTAATTGCCGTTGAACCATTGGAGAAAGTGGAAGCCTGCCCG
AGTCTCTGGCTGTGAAGGACTGGCCAAGCACTGGAAATTCCTCTCCTGCT
TGCCAAGGAACCATGTCATGTGTCGAACGCTTTGGGGCAAGA
FMO13414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps36-RA | 1346 | CG10711-RA | 89..1191 | 9..1109 | 5210 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13512139..13512867 | 831..103 | 3645 | 100 | Minus |
| 3L | 28110227 | 3L | 13511801..13512083 | 1109..829 | 965 | 93.3 | Minus |
| 3L | 28110227 | 3L | 13512929..13513024 | 104..9 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:25 has no hits.
FMO13414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:33 Download gff for
FMO13414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps36-RA | 76..1191 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:50 Download gff for
FMO13414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps36-RA | 81..1196 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:38 Download gff for
FMO13414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps36-RA | 81..1196 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:38 Download gff for
FMO13414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13511822..13512081 | 831..1088 | 94 | <- | Minus |
| 3L | 13512140..13512865 | 105..830 | 100 | <- | Minus |
| 3L | 13512929..13513029 | 1..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:50 Download gff for
FMO13414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13504922..13505181 | 831..1088 | 94 | <- | Minus |
| arm_3L | 13505240..13505965 | 105..830 | 100 | <- | Minus |
| arm_3L | 13506029..13506129 | 1..104 | 96 | | Minus |
