FMO13416.5prime Sequence
1132 bp (1034 high quality bases) assembled on 2013-02-11
> FMO13416.5prime
CAGTCGACATGAACAACCTGGCAGACACTGTGGTAGTTGATCCTGGATTC
GGAGGCGGCGACAAGCAGCAGCAGGCTGGACCGGCGCCGCAGGATGCCAG
CGTGGTGGTTCCTCCGCCGGCCACCAAGCAGTCCTCGGCTCTGAAGAAGA
CAAGTCGGTACAGGAGCCGCTCGCTTAGTGCCTCCTCAACGGATTCCTTC
AGCTCCGCCAGCTACACGGGCAGCAGCGAGGATGGCGACGACGTGCCGCC
CAGGGAGAAGGTCCAAAAGAACTCCAAAGGCAGCTCCGATTTCTGTGTAA
GGAACATAGGCGCCCAGCATGCATTTGGGCGCAGGGAGATCGAGATTGCG
GAGCAGGAGATGCCGGGCATCATAGCGCTGAAGAAGCGGGCGGCCGAGGA
CAAGCCTCTGAAGGATGCCAAGATCGTGGGTTGCACACACATCAACGCCC
AGACTGCCGTGCTCATCGAGACGCTGGTGGAACTGGGCGCCAGCGTGCGC
TGGGCCGCCTGCAACATCTACTCCACGCAGAACGAAGTGGCTGCTGCTTT
GGCCGAATCCGGAATCCCGATCTTTGCCTGGCGCGGCGAGACGGAAGAGG
ACTTCTGGTGGTGCATAGATCGCTGCGTTAACGCCGAGAACTGGCAGCCA
AACATGATCCTGGACGATGGCGGCGATGCCACGCACTTGATGCTAAAAAA
GTACCCGACCATGTTCAAGTTGGTCAAGGGAATCGTCGAGGAGAGCGTCA
CCGGAGTGCACCGTCTCTATCAGCTCTCTACGCCGGCAAGCTGACAGTGC
CGGCGATGAATGTCAACGATTCGGTGACAAAGACCAAATTTGACACCCTC
TACAGCTGCAAGGAATCCATCCTGGACAGCCTCAAGCGCTCCACGGACGT
GATGTTCGGTGGCAAGCAGTCGTGTCTGTGGCTACGGCGATGTGGGCAAG
GGATGTGCCCAGGCTCTAAAGGGGCAGGGCTGCATTGTGTACATCACGAA
GATCGATCCCATTGGCGCCCTGCAAGGCCAAGTATGGAATGGCTTCCGTT
GGTCAAGCTGAACGAGGGTGATCGCCACCGAAAACTTGGTGTGACGCGCG
AACCGTCAACCAGACCTGTTATTCGCAGCACA
FMO13416.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9977-RA | 3020 | CG9977-RA | 536..1601 | 8..1073 | 5060 | 98.7 | Plus |
| Ahcy89E-RD | 1969 | CG8956-RD | 574..1245 | 320..988 | 975 | 77 | Plus |
| Ahcy89E-RC | 1780 | CG8956-RC | 451..1122 | 320..988 | 975 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2771268..2771790 | 530..8 | 2615 | 100 | Minus |
| 3L | 28110227 | 3L | 2770041..2770493 | 978..529 | 2070 | 98.7 | Minus |
| 3R | 32079331 | 3R | 16979477..16980037 | 879..320 | 745 | 75.9 | Minus |
| 3L | 28110227 | 3L | 2769890..2769979 | 1067..976 | 225 | 90.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:45:31 has no hits.
FMO13416.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-02-11 10:58:35 Download gff for
FMO13416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9977-RA | 527..1605 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:53 Download gff for
FMO13416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9977-RA | 529..1607 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:41 Download gff for
FMO13416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9977-RA | 529..1607 | 1..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:41 Download gff for
FMO13416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2770042..2770491 | 531..977 | 98 | <- | Minus |
| 3L | 2771268..2771793 | 1..530 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:53 Download gff for
FMO13416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2770042..2770491 | 531..977 | 98 | <- | Minus |
| arm_3L | 2771268..2771793 | 1..530 | 99 | | Minus |
